miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 5' -60.5 NC_005808.1 + 1710 0.67 0.329896
Target:  5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3'
miRNA:   3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 33727 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 23713 0.67 0.299352
Target:  5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3'
miRNA:   3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 33398 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33350 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 15875 0.67 0.306778
Target:  5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3'
miRNA:   3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5'
26647 5' -60.5 NC_005808.1 + 33494 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 35609 0.67 0.329105
Target:  5'- cGCAUGGccucgGGCGG-CAGCGUcguuugaacaggcUGGCGg -3'
miRNA:   3'- cUGUGCCa----CCGCCgGUCGCA-------------ACCGCg -5'
26647 5' -60.5 NC_005808.1 + 33638 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33590 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33302 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33542 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33446 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 31098 0.67 0.306778
Target:  5'- cACcuCGGU-GCaGGCCGGCGagUGGUGCg -3'
miRNA:   3'- cUGu-GCCAcCG-CCGGUCGCa-ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 28662 0.68 0.28492
Target:  5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3'
miRNA:   3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 10600 0.68 0.271043
Target:  5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3'
miRNA:   3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5'
26647 5' -60.5 NC_005808.1 + 13302 0.68 0.28492
Target:  5'- aGCGCGccGG-GGCCGGCGUUguaggcGGCGUa -3'
miRNA:   3'- cUGUGCcaCCgCCGGUCGCAA------CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 23970 0.68 0.292066
Target:  5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3'
miRNA:   3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 18317 0.68 0.28492
Target:  5'- aGACACGGcaguaGCGGCgCAGC-UUGGUGg -3'
miRNA:   3'- -CUGUGCCac---CGCCG-GUCGcAACCGCg -5'
26647 5' -60.5 NC_005808.1 + 27522 0.68 0.257062
Target:  5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3'
miRNA:   3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.