miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 5' -60.5 NC_005808.1 + 16581 0.7 0.209707
Target:  5'- cGACGCGccGGacgaGGCCgaccacgcgauGGUGUUGGCGCc -3'
miRNA:   3'- -CUGUGCcaCCg---CCGG-----------UCGCAACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 7482 0.7 0.209707
Target:  5'- aGugGCGGUGGUauaGGCCccuugcaacuGGCGgcGcGCGCu -3'
miRNA:   3'- -CugUGCCACCG---CCGG----------UCGCaaC-CGCG- -5'
26647 5' -60.5 NC_005808.1 + 37579 0.7 0.214697
Target:  5'- --uGCGGUuggaacaGGCGGCCggcccAGCGUccggugcggcUGGCGCc -3'
miRNA:   3'- cugUGCCA-------CCGCCGG-----UCGCA----------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 3659 0.7 0.214697
Target:  5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3'
miRNA:   3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 12740 0.7 0.215258
Target:  5'- uGCugGGUGccGCGcCCAGaCGcUUGGCGCg -3'
miRNA:   3'- cUGugCCAC--CGCcGGUC-GC-AACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 33605 0.69 0.220361
Target:  5'- cGGCACGGccaccgcUGGCGGCaCGGCcaccgcUGGCGa -3'
miRNA:   3'- -CUGUGCC-------ACCGCCG-GUCGca----ACCGCg -5'
26647 5' -60.5 NC_005808.1 + 15539 0.69 0.220935
Target:  5'- uGCACGGUGcCGGCCuccaCGUccaggucaaUGGCGCc -3'
miRNA:   3'- cUGUGCCACcGCCGGuc--GCA---------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 21724 0.69 0.226738
Target:  5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3'
miRNA:   3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 17589 0.69 0.244927
Target:  5'- aACGCGGUGGCGcGCuauauCAGC-UUGGUGa -3'
miRNA:   3'- cUGUGCCACCGC-CG-----GUCGcAACCGCg -5'
26647 5' -60.5 NC_005808.1 + 25605 0.69 0.244927
Target:  5'- cGGCuACGGgGGCGcuGCCGGCGgcGGCa- -3'
miRNA:   3'- -CUG-UGCCaCCGC--CGGUCGCaaCCGcg -5'
26647 5' -60.5 NC_005808.1 + 8118 0.69 0.251254
Target:  5'- uGCACcgc-GCGGCCGGCGUUGGUuguggGCg -3'
miRNA:   3'- cUGUGccacCGCCGGUCGCAACCG-----CG- -5'
26647 5' -60.5 NC_005808.1 + 35242 0.69 0.251254
Target:  5'- gGGCAcCGGaUGGcCGGCCAGCaGUUcGGCu- -3'
miRNA:   3'- -CUGU-GCC-ACC-GCCGGUCG-CAA-CCGcg -5'
26647 5' -60.5 NC_005808.1 + 27522 0.68 0.257062
Target:  5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3'
miRNA:   3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 1462 0.68 0.257714
Target:  5'- cGGCGCGGUcGGCGGCCuccuggcaGGCcgggguaucgcaGUgcuggucggacaUGGCGCc -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--------UCG------------CA------------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 10600 0.68 0.271043
Target:  5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3'
miRNA:   3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5'
26647 5' -60.5 NC_005808.1 + 24741 0.68 0.277912
Target:  5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3'
miRNA:   3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 446 0.68 0.28492
Target:  5'- -gUugGGcugcUGcGCGGCCAGCuugcgGGCGCu -3'
miRNA:   3'- cuGugCC----AC-CGCCGGUCGcaa--CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 13302 0.68 0.28492
Target:  5'- aGCGCGccGG-GGCCGGCGUUguaggcGGCGUa -3'
miRNA:   3'- cUGUGCcaCCgCCGGUCGCAA------CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 4277 0.68 0.28492
Target:  5'- cGGCAUGGUGaUGGCC-GUGUcGGCGg -3'
miRNA:   3'- -CUGUGCCACcGCCGGuCGCAaCCGCg -5'
26647 5' -60.5 NC_005808.1 + 28662 0.68 0.28492
Target:  5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3'
miRNA:   3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.