Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 33302 | 0.67 | 0.336274 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 33590 | 0.67 | 0.336274 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 33542 | 0.67 | 0.336274 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 33494 | 0.67 | 0.336274 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 1710 | 0.67 | 0.329896 |
Target: 5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3' miRNA: 3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 17092 | 0.67 | 0.329896 |
Target: 5'- cGGCGCGGUucuCGGCCGgGCcUUGGgGCu -3' miRNA: 3'- -CUGUGCCAcc-GCCGGU-CGcAACCgCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 39050 | 0.67 | 0.329896 |
Target: 5'- cGGCGCGGuUGGCGGgaCuGCGcgGuGUGCg -3' miRNA: 3'- -CUGUGCC-ACCGCCg-GuCGCaaC-CGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 35609 | 0.67 | 0.329105 |
Target: 5'- cGCAUGGccucgGGCGG-CAGCGUcguuugaacaggcUGGCGg -3' miRNA: 3'- cUGUGCCa----CCGCCgGUCGCA-------------ACCGCg -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 8663 | 0.67 | 0.32205 |
Target: 5'- cGCGCGGUcGGCauugcguGCCgcgcgcaccucGGCGUUGGUGUa -3' miRNA: 3'- cUGUGCCA-CCGc------CGG-----------UCGCAACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 15875 | 0.67 | 0.306778 |
Target: 5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3' miRNA: 3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 27836 | 0.67 | 0.306778 |
Target: 5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3' miRNA: 3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 31098 | 0.67 | 0.306778 |
Target: 5'- cACcuCGGU-GCaGGCCGGCGagUGGUGCg -3' miRNA: 3'- cUGu-GCCAcCG-CCGGUCGCa-ACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 12020 | 0.67 | 0.306778 |
Target: 5'- aGCGCGGccgUGGcCGGCgaggucuugccCAGCGUgucgaagucgaUGGCGCc -3' miRNA: 3'- cUGUGCC---ACC-GCCG-----------GUCGCA-----------ACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 23713 | 0.67 | 0.299352 |
Target: 5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3' miRNA: 3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 23970 | 0.68 | 0.292066 |
Target: 5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3' miRNA: 3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 4277 | 0.68 | 0.28492 |
Target: 5'- cGGCAUGGUGaUGGCC-GUGUcGGCGg -3' miRNA: 3'- -CUGUGCCACcGCCGGuCGCAaCCGCg -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 13302 | 0.68 | 0.28492 |
Target: 5'- aGCGCGccGG-GGCCGGCGUUguaggcGGCGUa -3' miRNA: 3'- cUGUGCcaCCgCCGGUCGCAA------CCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 18317 | 0.68 | 0.28492 |
Target: 5'- aGACACGGcaguaGCGGCgCAGC-UUGGUGg -3' miRNA: 3'- -CUGUGCCac---CGCCG-GUCGcAACCGCg -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 446 | 0.68 | 0.28492 |
Target: 5'- -gUugGGcugcUGcGCGGCCAGCuugcgGGCGCu -3' miRNA: 3'- cuGugCC----AC-CGCCGGUCGcaa--CCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 32289 | 0.68 | 0.28492 |
Target: 5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3' miRNA: 3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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