miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 5' -60.5 NC_005808.1 + 5644 1.1 0.000181
Target:  5'- cGACACGGUGGCGGCCAGCGUUGGCGCc -3'
miRNA:   3'- -CUGUGCCACCGCCGGUCGCAACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 24741 0.68 0.277912
Target:  5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3'
miRNA:   3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 23970 0.68 0.292066
Target:  5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3'
miRNA:   3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 21393 0.66 0.388708
Target:  5'- gGGCGCGGUGGcCGGCaucaAGCccgaaGUGCu -3'
miRNA:   3'- -CUGUGCCACC-GCCGg---UCGcaac-CGCG- -5'
26647 5' -60.5 NC_005808.1 + 5599 0.74 0.109446
Target:  5'- cGACcuggGCGGaaccugGGCGGCCGGCGUguccuacgacuuUGGCaGCa -3'
miRNA:   3'- -CUG----UGCCa-----CCGCCGGUCGCA------------ACCG-CG- -5'
26647 5' -60.5 NC_005808.1 + 4086 0.73 0.13282
Target:  5'- cGCGCGGcaugacgcUGGUGGCCGGCGcguuuugGGCGg -3'
miRNA:   3'- cUGUGCC--------ACCGCCGGUCGCaa-----CCGCg -5'
26647 5' -60.5 NC_005808.1 + 21207 0.71 0.17422
Target:  5'- gGGCGCGGacacGGCGGCCAaGCug-GGCaGCg -3'
miRNA:   3'- -CUGUGCCa---CCGCCGGU-CGcaaCCG-CG- -5'
26647 5' -60.5 NC_005808.1 + 34107 0.71 0.183775
Target:  5'- cGCGCcGaUGGCGGgCAGCGacaGGCGCg -3'
miRNA:   3'- cUGUGcC-ACCGCCgGUCGCaa-CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 37579 0.7 0.214697
Target:  5'- --uGCGGUuggaacaGGCGGCCggcccAGCGUccggugcggcUGGCGCc -3'
miRNA:   3'- cugUGCCA-------CCGCCGG-----UCGCA----------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 10600 0.68 0.271043
Target:  5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3'
miRNA:   3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5'
26647 5' -60.5 NC_005808.1 + 17589 0.69 0.244927
Target:  5'- aACGCGGUGGCGcGCuauauCAGC-UUGGUGa -3'
miRNA:   3'- cUGUGCCACCGC-CG-----GUCGcAACCGCg -5'
26647 5' -60.5 NC_005808.1 + 3659 0.7 0.214697
Target:  5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3'
miRNA:   3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 30204 0.8 0.039271
Target:  5'- cGACGCGGU-GCaGGCCGGCGgcguguucUGGCGCg -3'
miRNA:   3'- -CUGUGCCAcCG-CCGGUCGCa-------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 35242 0.69 0.251254
Target:  5'- gGGCAcCGGaUGGcCGGCCAGCaGUUcGGCu- -3'
miRNA:   3'- -CUGU-GCC-ACC-GCCGGUCG-CAA-CCGcg -5'
26647 5' -60.5 NC_005808.1 + 23819 0.75 0.087472
Target:  5'- cGGCcCGGUGGC-GCCGGCa-UGGCGCu -3'
miRNA:   3'- -CUGuGCCACCGcCGGUCGcaACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 33680 0.7 0.198975
Target:  5'- --aGCGGUGGCcgugccGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 27522 0.68 0.257062
Target:  5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3'
miRNA:   3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 32289 0.68 0.28492
Target:  5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3'
miRNA:   3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 34933 0.74 0.10351
Target:  5'- cGCACGcucGGCGGCCGGCuugcuGUUGGCGa -3'
miRNA:   3'- cUGUGCca-CCGCCGGUCG-----CAACCGCg -5'
26647 5' -60.5 NC_005808.1 + 40910 0.71 0.160718
Target:  5'- --gGCGGUcauGGcCGGCCuGCGccUGGCGCg -3'
miRNA:   3'- cugUGCCA---CC-GCCGGuCGCa-ACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.