Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26648 | 3' | -51.8 | NC_005808.1 | + | 5803 | 1.09 | 0.001846 |
Target: 5'- aACUCGCCGACAAACUUAGCCGAACCGu -3' miRNA: 3'- -UGAGCGGCUGUUUGAAUCGGCUUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 42310 | 0.77 | 0.247993 |
Target: 5'- uGCUCGCCGACcauccggguguGCUUGGCCu-GCCGa -3' miRNA: 3'- -UGAGCGGCUGuu---------UGAAUCGGcuUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 27578 | 0.75 | 0.324006 |
Target: 5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3' miRNA: 3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 37735 | 0.73 | 0.423942 |
Target: 5'- gGCUCGCCGGCGAggauuggaaGC-UGGCCGcuuuCCGu -3' miRNA: 3'- -UGAGCGGCUGUU---------UGaAUCGGCuu--GGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 8525 | 0.73 | 0.44096 |
Target: 5'- -gUCGCCGGCGAACUUgcccagguaucgcaGGCCGcGCuCGa -3' miRNA: 3'- ugAGCGGCUGUUUGAA--------------UCGGCuUG-GC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 23623 | 0.72 | 0.485655 |
Target: 5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3' miRNA: 3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 41874 | 0.72 | 0.496359 |
Target: 5'- --cCGCCaGGCGcucGACUUGGCCGuGGCCGa -3' miRNA: 3'- ugaGCGG-CUGU---UUGAAUCGGC-UUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 23061 | 0.71 | 0.540162 |
Target: 5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3' miRNA: 3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 18000 | 0.71 | 0.540162 |
Target: 5'- -gUCGCCGcCGGACUUGucGuCCGAACCu -3' miRNA: 3'- ugAGCGGCuGUUUGAAU--C-GGCUUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 9563 | 0.71 | 0.551324 |
Target: 5'- uGCUCGCCGgugGCGAGCauccGGUCGAACaCGu -3' miRNA: 3'- -UGAGCGGC---UGUUUGaa--UCGGCUUG-GC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 9623 | 0.7 | 0.585193 |
Target: 5'- uGCUCGCCaccGGCGAGCagaucgcacUGGCCGAACa- -3' miRNA: 3'- -UGAGCGG---CUGUUUGa--------AUCGGCUUGgc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 18035 | 0.7 | 0.585193 |
Target: 5'- uCUUGUCGGCGGGCUgcuugggGGCCuuACCGg -3' miRNA: 3'- uGAGCGGCUGUUUGAa------UCGGcuUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 19207 | 0.7 | 0.596579 |
Target: 5'- uCUgGCUGACGGugUgggGGCCGAACa- -3' miRNA: 3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 24467 | 0.7 | 0.596579 |
Target: 5'- --aCGCCGACGAccugcuGCUUGGCCuGcGCCa -3' miRNA: 3'- ugaGCGGCUGUU------UGAAUCGG-CuUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 26499 | 0.69 | 0.642349 |
Target: 5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3' miRNA: 3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 28224 | 0.69 | 0.653794 |
Target: 5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3' miRNA: 3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 35018 | 0.69 | 0.661794 |
Target: 5'- -gUCGCCGAC-GACUUcguggacguguccaAGCCGGuggcGCCGc -3' miRNA: 3'- ugAGCGGCUGuUUGAA--------------UCGGCU----UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 18465 | 0.69 | 0.665218 |
Target: 5'- cUUCGCCGACG----UGGCCGccACCGg -3' miRNA: 3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 34953 | 0.69 | 0.665218 |
Target: 5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3' miRNA: 3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 21349 | 0.69 | 0.67547 |
Target: 5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3' miRNA: 3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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