miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26648 3' -51.8 NC_005808.1 + 679 0.66 0.844016
Target:  5'- gGC-CGCCuACGgcGGCgccGGCCGGGCCGc -3'
miRNA:   3'- -UGaGCGGcUGU--UUGaa-UCGGCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 1182 0.67 0.775545
Target:  5'- uCUCGCCGcCGGGgUcGGCCGggUUGu -3'
miRNA:   3'- uGAGCGGCuGUUUgAaUCGGCuuGGC- -5'
26648 3' -51.8 NC_005808.1 + 1527 0.69 0.687952
Target:  5'- uAUUCGCCGcccaGCAGuucggcCUUgguaaAGCCGAACCGc -3'
miRNA:   3'- -UGAGCGGC----UGUUu-----GAA-----UCGGCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 2709 0.69 0.687952
Target:  5'- cCUCGCaCGGCAAGC---GCCGGACg- -3'
miRNA:   3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5'
26648 3' -51.8 NC_005808.1 + 4700 0.67 0.765023
Target:  5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5'
26648 3' -51.8 NC_005808.1 + 4822 0.67 0.754353
Target:  5'- uGCUgGCCGGCGAcaggucGCcgUAGUCGAugACCa -3'
miRNA:   3'- -UGAgCGGCUGUU------UGa-AUCGGCU--UGGc -5'
26648 3' -51.8 NC_005808.1 + 5803 1.09 0.001846
Target:  5'- aACUCGCCGACAAACUUAGCCGAACCGu -3'
miRNA:   3'- -UGAGCGGCUGUUUGAAUCGGCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 8525 0.73 0.44096
Target:  5'- -gUCGCCGGCGAACUUgcccagguaucgcaGGCCGcGCuCGa -3'
miRNA:   3'- ugAGCGGCUGUUUGAA--------------UCGGCuUG-GC- -5'
26648 3' -51.8 NC_005808.1 + 9360 0.66 0.805104
Target:  5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3'
miRNA:   3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5'
26648 3' -51.8 NC_005808.1 + 9563 0.71 0.551324
Target:  5'- uGCUCGCCGgugGCGAGCauccGGUCGAACaCGu -3'
miRNA:   3'- -UGAGCGGC---UGUUUGaa--UCGGCUUG-GC- -5'
26648 3' -51.8 NC_005808.1 + 9623 0.7 0.585193
Target:  5'- uGCUCGCCaccGGCGAGCagaucgcacUGGCCGAACa- -3'
miRNA:   3'- -UGAGCGG---CUGUUUGa--------AUCGGCUUGgc -5'
26648 3' -51.8 NC_005808.1 + 11184 0.68 0.710453
Target:  5'- uGCUCGCaCGuuuGAACcaaUUGGCCGcAGCCGa -3'
miRNA:   3'- -UGAGCG-GCug-UUUG---AAUCGGC-UUGGC- -5'
26648 3' -51.8 NC_005808.1 + 11776 0.69 0.687952
Target:  5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3'
miRNA:   3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5'
26648 3' -51.8 NC_005808.1 + 12083 0.67 0.796094
Target:  5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5'
26648 3' -51.8 NC_005808.1 + 14956 0.66 0.815901
Target:  5'- -aUCGCCGcGCAGACccugaaAGCCGGGCa- -3'
miRNA:   3'- ugAGCGGC-UGUUUGaa----UCGGCUUGgc -5'
26648 3' -51.8 NC_005808.1 + 17084 0.68 0.743548
Target:  5'- gGCgaaGCCGGCGcgguuCUcGGCCGGGCCu -3'
miRNA:   3'- -UGag-CGGCUGUuu---GAaUCGGCUUGGc -5'
26648 3' -51.8 NC_005808.1 + 17725 0.67 0.785906
Target:  5'- aGCcCGCCGACGcaucaaGAUcgUGGCCGuacuGCCGc -3'
miRNA:   3'- -UGaGCGGCUGU------UUGa-AUCGGCu---UGGC- -5'
26648 3' -51.8 NC_005808.1 + 18000 0.71 0.540162
Target:  5'- -gUCGCCGcCGGACUUGucGuCCGAACCu -3'
miRNA:   3'- ugAGCGGCuGUUUGAAU--C-GGCUUGGc -5'
26648 3' -51.8 NC_005808.1 + 18035 0.7 0.585193
Target:  5'- uCUUGUCGGCGGGCUgcuugggGGCCuuACCGg -3'
miRNA:   3'- uGAGCGGCUGUUUGAa------UCGGcuUGGC- -5'
26648 3' -51.8 NC_005808.1 + 18365 0.68 0.721586
Target:  5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3'
miRNA:   3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.