Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26648 | 3' | -51.8 | NC_005808.1 | + | 18465 | 0.66 | 0.843113 |
Target: 5'- cGCggCGCCGGC-GGCgucGGCCGAuucguccACCGu -3' miRNA: 3'- -UGa-GCGGCUGuUUGaa-UCGGCU-------UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 18465 | 0.69 | 0.665218 |
Target: 5'- cUUCGCCGACG----UGGCCGccACCGg -3' miRNA: 3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 18578 | 0.67 | 0.796094 |
Target: 5'- cGCUCGCgGugAcGGCcUGGCCGu-CCGa -3' miRNA: 3'- -UGAGCGgCugU-UUGaAUCGGCuuGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 19207 | 0.7 | 0.596579 |
Target: 5'- uCUgGCUGACGGugUgggGGCCGAACa- -3' miRNA: 3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 21349 | 0.69 | 0.67547 |
Target: 5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3' miRNA: 3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 23061 | 0.71 | 0.540162 |
Target: 5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3' miRNA: 3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 23623 | 0.72 | 0.485655 |
Target: 5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3' miRNA: 3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 23759 | 0.66 | 0.844016 |
Target: 5'- --aUGCCGGCGccACcgGGCCGAugCGc -3' miRNA: 3'- ugaGCGGCUGUu-UGaaUCGGCUugGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 24395 | 0.66 | 0.806096 |
Target: 5'- aACUCGCUGcGCAAguugaagaaGCgcAGCCGGcCCGa -3' miRNA: 3'- -UGAGCGGC-UGUU---------UGaaUCGGCUuGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 24467 | 0.7 | 0.596579 |
Target: 5'- --aCGCCGACGAccugcuGCUUGGCCuGcGCCa -3' miRNA: 3'- ugaGCGGCUGUU------UGAAUCGG-CuUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 25381 | 0.66 | 0.852919 |
Target: 5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3' miRNA: 3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 25711 | 0.67 | 0.785906 |
Target: 5'- --aCGCCGGCAGAacu-GCCGAGgUGg -3' miRNA: 3'- ugaGCGGCUGUUUgaauCGGCUUgGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 26071 | 0.66 | 0.844016 |
Target: 5'- --gCGCuCGGCGAACUcgGGgCGGGCCu -3' miRNA: 3'- ugaGCG-GCUGUUUGAa-UCgGCUUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 26499 | 0.69 | 0.642349 |
Target: 5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3' miRNA: 3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 27578 | 0.75 | 0.324006 |
Target: 5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3' miRNA: 3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 28224 | 0.69 | 0.653794 |
Target: 5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3' miRNA: 3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 31024 | 0.66 | 0.852919 |
Target: 5'- gGCUUGCCGGCcgAGGCaaucGCgCGGGCCa -3' miRNA: 3'- -UGAGCGGCUG--UUUGaau-CG-GCUUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 31311 | 0.66 | 0.844016 |
Target: 5'- -gUCGcCCGGCucguAGCUgGGCCGcgcGCCGg -3' miRNA: 3'- ugAGC-GGCUGu---UUGAaUCGGCu--UGGC- -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 31391 | 0.66 | 0.834872 |
Target: 5'- -gUCGCCG-CGAcCUgggauuccAGCCGGGCCa -3' miRNA: 3'- ugAGCGGCuGUUuGAa-------UCGGCUUGGc -5' |
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26648 | 3' | -51.8 | NC_005808.1 | + | 31508 | 0.68 | 0.732622 |
Target: 5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3' miRNA: 3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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