miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26648 3' -51.8 NC_005808.1 + 18035 0.7 0.585193
Target:  5'- uCUUGUCGGCGGGCUgcuugggGGCCuuACCGg -3'
miRNA:   3'- uGAGCGGCUGUUUGAa------UCGGcuUGGC- -5'
26648 3' -51.8 NC_005808.1 + 24467 0.7 0.596579
Target:  5'- --aCGCCGACGAccugcuGCUUGGCCuGcGCCa -3'
miRNA:   3'- ugaGCGGCUGUU------UGAAUCGG-CuUGGc -5'
26648 3' -51.8 NC_005808.1 + 26499 0.69 0.642349
Target:  5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3'
miRNA:   3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5'
26648 3' -51.8 NC_005808.1 + 28224 0.69 0.653794
Target:  5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3'
miRNA:   3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 35018 0.69 0.661794
Target:  5'- -gUCGCCGAC-GACUUcguggacguguccaAGCCGGuggcGCCGc -3'
miRNA:   3'- ugAGCGGCUGuUUGAA--------------UCGGCU----UGGC- -5'
26648 3' -51.8 NC_005808.1 + 34367 0.69 0.676608
Target:  5'- cUUCGCCGACGAggGCacGGCCGcGCaCGa -3'
miRNA:   3'- uGAGCGGCUGUU--UGaaUCGGCuUG-GC- -5'
26648 3' -51.8 NC_005808.1 + 1527 0.69 0.687952
Target:  5'- uAUUCGCCGcccaGCAGuucggcCUUgguaaAGCCGAACCGc -3'
miRNA:   3'- -UGAGCGGC----UGUUu-----GAA-----UCGGCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 11776 0.69 0.687952
Target:  5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3'
miRNA:   3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5'
26648 3' -51.8 NC_005808.1 + 18465 0.69 0.665218
Target:  5'- cUUCGCCGACG----UGGCCGccACCGg -3'
miRNA:   3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5'
26648 3' -51.8 NC_005808.1 + 34953 0.69 0.665218
Target:  5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3'
miRNA:   3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5'
26648 3' -51.8 NC_005808.1 + 21349 0.69 0.67547
Target:  5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3'
miRNA:   3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5'
26648 3' -51.8 NC_005808.1 + 2709 0.69 0.687952
Target:  5'- cCUCGCaCGGCAAGC---GCCGGACg- -3'
miRNA:   3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5'
26648 3' -51.8 NC_005808.1 + 33962 0.68 0.710453
Target:  5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3'
miRNA:   3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5'
26648 3' -51.8 NC_005808.1 + 19207 0.7 0.596579
Target:  5'- uCUgGCUGACGGugUgggGGCCGAACa- -3'
miRNA:   3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5'
26648 3' -51.8 NC_005808.1 + 9623 0.7 0.585193
Target:  5'- uGCUCGCCaccGGCGAGCagaucgcacUGGCCGAACa- -3'
miRNA:   3'- -UGAGCGG---CUGUUUGa--------AUCGGCUUGgc -5'
26648 3' -51.8 NC_005808.1 + 23061 0.71 0.540162
Target:  5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3'
miRNA:   3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5'
26648 3' -51.8 NC_005808.1 + 23623 0.72 0.485655
Target:  5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3'
miRNA:   3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5'
26648 3' -51.8 NC_005808.1 + 27578 0.75 0.324006
Target:  5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3'
miRNA:   3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5'
26648 3' -51.8 NC_005808.1 + 42310 0.77 0.247993
Target:  5'- uGCUCGCCGACcauccggguguGCUUGGCCu-GCCGa -3'
miRNA:   3'- -UGAGCGGCUGuu---------UGAAUCGGcuUGGC- -5'
26648 3' -51.8 NC_005808.1 + 25381 0.66 0.852919
Target:  5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3'
miRNA:   3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.