miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 31498 0.66 0.648533
Target:  5'- cGC-CGCAGAUCGuggCGuCGCCGUUGa -3'
miRNA:   3'- uCGcGCGUCUAGUug-GC-GUGGCAAUg -5'
26649 5' -54.2 NC_005808.1 + 20736 0.66 0.648533
Target:  5'- uGCGCGCAuGAgcaauuaCGACCcCACCGUa-- -3'
miRNA:   3'- uCGCGCGU-CUa------GUUGGcGUGGCAaug -5'
26649 5' -54.2 NC_005808.1 + 7973 0.67 0.637157
Target:  5'- cGGCGCGCA--UCGgguuuccaugucGCCGCGCuCGuUUGCc -3'
miRNA:   3'- -UCGCGCGUcuAGU------------UGGCGUG-GC-AAUG- -5'
26649 5' -54.2 NC_005808.1 + 25801 0.67 0.637157
Target:  5'- cGGCGCGCucGGuAUCGuugauCUGCACCGg--- -3'
miRNA:   3'- -UCGCGCG--UC-UAGUu----GGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 14371 0.67 0.637157
Target:  5'- cGCGCGcCAGuUCAgcaacgacguggGCCGCAUCGccgACa -3'
miRNA:   3'- uCGCGC-GUCuAGU------------UGGCGUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 19858 0.67 0.637157
Target:  5'- cAGCGUGguGAguUCGGgCGUGCCGaagGCg -3'
miRNA:   3'- -UCGCGCguCU--AGUUgGCGUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 13972 0.67 0.637157
Target:  5'- aAGCGCGUAGGUCuuguACuCGCugGCCucgUGCu -3'
miRNA:   3'- -UCGCGCGUCUAGu---UG-GCG--UGGca-AUG- -5'
26649 5' -54.2 NC_005808.1 + 20614 0.67 0.625775
Target:  5'- cAGCaaGCGGGggcGCCGCAUCGUgugGCg -3'
miRNA:   3'- -UCGcgCGUCUaguUGGCGUGGCAa--UG- -5'
26649 5' -54.2 NC_005808.1 + 36489 0.67 0.6144
Target:  5'- cAGCGCagGCcGGUCuuGCCGCAgCGuUUGCa -3'
miRNA:   3'- -UCGCG--CGuCUAGu-UGGCGUgGC-AAUG- -5'
26649 5' -54.2 NC_005808.1 + 13727 0.67 0.607582
Target:  5'- uGCGCGuCAuAUCAccaaggacauggacgGCCGCGCCGgacuUGCu -3'
miRNA:   3'- uCGCGC-GUcUAGU---------------UGGCGUGGCa---AUG- -5'
26649 5' -54.2 NC_005808.1 + 27419 0.67 0.603041
Target:  5'- cGCGCGCcuGGcgC-ACCGCGCCcg-GCg -3'
miRNA:   3'- uCGCGCG--UCuaGuUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 7149 0.68 0.557968
Target:  5'- gGGCGCGCcguGGGUaGGCCGCGgCGUc-- -3'
miRNA:   3'- -UCGCGCG---UCUAgUUGGCGUgGCAaug -5'
26649 5' -54.2 NC_005808.1 + 20618 0.68 0.557968
Target:  5'- cGGCGuCGCAGGUCGgugucgGCCuGCGCuCGUUc- -3'
miRNA:   3'- -UCGC-GCGUCUAGU------UGG-CGUG-GCAAug -5'
26649 5' -54.2 NC_005808.1 + 27796 0.68 0.557968
Target:  5'- cGCGCGCcGcgCAGCCGCAgcaCGUc-- -3'
miRNA:   3'- uCGCGCGuCuaGUUGGCGUg--GCAaug -5'
26649 5' -54.2 NC_005808.1 + 37646 0.68 0.557968
Target:  5'- cAGCGCGauacgCGGCUGCAUCGUgGCg -3'
miRNA:   3'- -UCGCGCgucuaGUUGGCGUGGCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 10063 0.68 0.546836
Target:  5'- gGGCGCGCGGcacuuUCGACCcCGCCa---- -3'
miRNA:   3'- -UCGCGCGUCu----AGUUGGcGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 11177 0.68 0.546836
Target:  5'- cGUGCGCuGGUCGGCCGUGgUGauggUGCg -3'
miRNA:   3'- uCGCGCGuCUAGUUGGCGUgGCa---AUG- -5'
26649 5' -54.2 NC_005808.1 + 25876 0.68 0.546836
Target:  5'- cGGCccgGUGCAGAUCAACgauaccgagCGCGCCGcgcGCa -3'
miRNA:   3'- -UCG---CGCGUCUAGUUG---------GCGUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 23417 0.68 0.545727
Target:  5'- gAGCGCGCcGGUCAgugcgacGCCG-GCCGggaUGCg -3'
miRNA:   3'- -UCGCGCGuCUAGU-------UGGCgUGGCa--AUG- -5'
26649 5' -54.2 NC_005808.1 + 10882 0.68 0.535776
Target:  5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3'
miRNA:   3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.