miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 11431 0.69 0.481804
Target:  5'- cGGCGUGCAGGUCG-CCGauaaggcgcgaCACCGgcaGCu -3'
miRNA:   3'- -UCGCGCGUCUAGUuGGC-----------GUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 12449 0.74 0.268647
Target:  5'- aAGCGCGCAGGcaUCGACuCGCcgACCGacGCg -3'
miRNA:   3'- -UCGCGCGUCU--AGUUG-GCG--UGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 13132 0.66 0.704941
Target:  5'- gAGCGCcaauucaacauGCAGA-CGGCCGCACUcaaGCa -3'
miRNA:   3'- -UCGCG-----------CGUCUaGUUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 13237 0.69 0.524795
Target:  5'- gGGCGCcCAGcgCGGCCGaCACUGgccgACa -3'
miRNA:   3'- -UCGCGcGUCuaGUUGGC-GUGGCaa--UG- -5'
26649 5' -54.2 NC_005808.1 + 13391 0.79 0.126889
Target:  5'- cAGCGCGCGGuuguaGGCgGCAUCGUUGCg -3'
miRNA:   3'- -UCGCGCGUCuag--UUGgCGUGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 13633 0.69 0.524795
Target:  5'- gAGCGCGCGu-UCAACauCGCCGUggGCa -3'
miRNA:   3'- -UCGCGCGUcuAGUUGgcGUGGCAa-UG- -5'
26649 5' -54.2 NC_005808.1 + 13727 0.67 0.607582
Target:  5'- uGCGCGuCAuAUCAccaaggacauggacgGCCGCGCCGgacuUGCu -3'
miRNA:   3'- uCGCGC-GUcUAGU---------------UGGCGUGGCa---AUG- -5'
26649 5' -54.2 NC_005808.1 + 13972 0.67 0.637157
Target:  5'- aAGCGCGUAGGUCuuguACuCGCugGCCucgUGCu -3'
miRNA:   3'- -UCGCGCGUCUAGu---UG-GCG--UGGca-AUG- -5'
26649 5' -54.2 NC_005808.1 + 14306 0.71 0.411035
Target:  5'- uGCGCGUGGAcgacgcacUUAACCGCGCCa---- -3'
miRNA:   3'- uCGCGCGUCU--------AGUUGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 14371 0.67 0.637157
Target:  5'- cGCGCGcCAGuUCAgcaacgacguggGCCGCAUCGccgACa -3'
miRNA:   3'- uCGCGC-GUCuAGU------------UGGCGUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 14642 0.69 0.524795
Target:  5'- cGGUGCGCAGAUUGAUaccuUGCACCuugGCc -3'
miRNA:   3'- -UCGCGCGUCUAGUUG----GCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 15588 0.7 0.440593
Target:  5'- cGCGCuGCGGAUgcACCGCGCCa---- -3'
miRNA:   3'- uCGCG-CGUCUAguUGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 17804 0.66 0.704941
Target:  5'- cGCGCGCAGuauUCcGCCuGCACgGa--- -3'
miRNA:   3'- uCGCGCGUCu--AGuUGG-CGUGgCaaug -5'
26649 5' -54.2 NC_005808.1 + 18467 0.66 0.681393
Target:  5'- cGGCGCcgGCGGcGUCGGCCGauucgucCACCGUgaugACc -3'
miRNA:   3'- -UCGCG--CGUC-UAGUUGGC-------GUGGCAa---UG- -5'
26649 5' -54.2 NC_005808.1 + 19512 0.72 0.330164
Target:  5'- uGGCGUGCAGccCGAgaagucCCGCACCG-UGCa -3'
miRNA:   3'- -UCGCGCGUCuaGUU------GGCGUGGCaAUG- -5'
26649 5' -54.2 NC_005808.1 + 19858 0.67 0.637157
Target:  5'- cAGCGUGguGAguUCGGgCGUGCCGaagGCg -3'
miRNA:   3'- -UCGCGCguCU--AGUUgGCGUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 20614 0.67 0.625775
Target:  5'- cAGCaaGCGGGggcGCCGCAUCGUgugGCg -3'
miRNA:   3'- -UCGcgCGUCUaguUGGCGUGGCAa--UG- -5'
26649 5' -54.2 NC_005808.1 + 20618 0.68 0.557968
Target:  5'- cGGCGuCGCAGGUCGgugucgGCCuGCGCuCGUUc- -3'
miRNA:   3'- -UCGC-GCGUCUAGU------UGG-CGUG-GCAAug -5'
26649 5' -54.2 NC_005808.1 + 20736 0.66 0.648533
Target:  5'- uGCGCGCAuGAgcaauuaCGACCcCACCGUa-- -3'
miRNA:   3'- uCGCGCGU-CUa------GUUGGcGUGGCAaug -5'
26649 5' -54.2 NC_005808.1 + 21238 0.75 0.235107
Target:  5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3'
miRNA:   3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.