miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 605 0.71 0.392026
Target:  5'- cGCcUGCGGGUCGGCCagcaGCGCCGUggACa -3'
miRNA:   3'- uCGcGCGUCUAGUUGG----CGUGGCAa-UG- -5'
26649 5' -54.2 NC_005808.1 + 1157 0.66 0.648533
Target:  5'- cGCGCGacacggccaAGGcaaUCuACCGCGCgCGUUACu -3'
miRNA:   3'- uCGCGCg--------UCU---AGuUGGCGUG-GCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 2134 0.78 0.130604
Target:  5'- cGUGCaGCAGccgGUCAACCGCGCCGccgUACa -3'
miRNA:   3'- uCGCG-CGUC---UAGUUGGCGUGGCa--AUG- -5'
26649 5' -54.2 NC_005808.1 + 4036 0.71 0.392026
Target:  5'- uGcCGCGCGGGUCGAgCGCAgCCGg--- -3'
miRNA:   3'- uC-GCGCGUCUAGUUgGCGU-GGCaaug -5'
26649 5' -54.2 NC_005808.1 + 4531 0.66 0.671227
Target:  5'- uGGCGUGCuGggCggUCGUGCCGccGCg -3'
miRNA:   3'- -UCGCGCGuCuaGuuGGCGUGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 6325 1.09 0.000875
Target:  5'- cAGCGCGCAGAUCAACCGCACCGUUACc -3'
miRNA:   3'- -UCGCGCGUCUAGUUGGCGUGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 7149 0.68 0.557968
Target:  5'- gGGCGCGCcguGGGUaGGCCGCGgCGUc-- -3'
miRNA:   3'- -UCGCGCG---UCUAgUUGGCGUgGCAaug -5'
26649 5' -54.2 NC_005808.1 + 7634 0.66 0.68252
Target:  5'- gGGgGCGCGGcUCGACCcaCGCCGg--- -3'
miRNA:   3'- -UCgCGCGUCuAGUUGGc-GUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 7703 0.68 0.535776
Target:  5'- gAGCcgGCGUGGGUCgAGCCGCGCCc---- -3'
miRNA:   3'- -UCG--CGCGUCUAG-UUGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 7749 0.66 0.68252
Target:  5'- -cUGCGCAG-UCAGCgauugcaGCACCGgcGCg -3'
miRNA:   3'- ucGCGCGUCuAGUUGg------CGUGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 7973 0.67 0.637157
Target:  5'- cGGCGCGCA--UCGgguuuccaugucGCCGCGCuCGuUUGCc -3'
miRNA:   3'- -UCGCGCGUcuAGU------------UGGCGUG-GC-AAUG- -5'
26649 5' -54.2 NC_005808.1 + 8144 0.69 0.524795
Target:  5'- gGGCGUGCGGGugUCGG-CGCugCGUcccUGCg -3'
miRNA:   3'- -UCGCGCGUCU--AGUUgGCGugGCA---AUG- -5'
26649 5' -54.2 NC_005808.1 + 8785 0.77 0.173623
Target:  5'- cGCgGCGCAcgaugGGUCGGCCGCGCCGgucagUACc -3'
miRNA:   3'- uCG-CGCGU-----CUAGUUGGCGUGGCa----AUG- -5'
26649 5' -54.2 NC_005808.1 + 9280 0.71 0.411035
Target:  5'- cGCGcCGCAGAaCGugcGCCGCGCCGc--- -3'
miRNA:   3'- uCGC-GCGUCUaGU---UGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 10063 0.68 0.546836
Target:  5'- gGGCGCGCGGcacuuUCGACCcCGCCa---- -3'
miRNA:   3'- -UCGCGCGUCu----AGUUGGcGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 10597 0.66 0.659894
Target:  5'- aGGCGCGCAGc----CUGCACCGc--- -3'
miRNA:   3'- -UCGCGCGUCuaguuGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 10882 0.68 0.535776
Target:  5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3'
miRNA:   3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 11177 0.68 0.546836
Target:  5'- cGUGCGCuGGUCGGCCGUGgUGauggUGCg -3'
miRNA:   3'- uCGCGCGuCUAGUUGGCGUgGCa---AUG- -5'
26649 5' -54.2 NC_005808.1 + 11263 0.69 0.481804
Target:  5'- -aUGCGCGGcAUUGACCGCACCa---- -3'
miRNA:   3'- ucGCGCGUC-UAGUUGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 11423 0.69 0.524795
Target:  5'- gGGCGaGCAGGUCGccACCGUACUGc--- -3'
miRNA:   3'- -UCGCgCGUCUAGU--UGGCGUGGCaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.