miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 6325 1.09 0.000875
Target:  5'- cAGCGCGCAGAUCAACCGCACCGUUACc -3'
miRNA:   3'- -UCGCGCGUCUAGUUGGCGUGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 13391 0.79 0.126889
Target:  5'- cAGCGCGCGGuuguaGGCgGCAUCGUUGCg -3'
miRNA:   3'- -UCGCGCGUCuag--UUGgCGUGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 2134 0.78 0.130604
Target:  5'- cGUGCaGCAGccgGUCAACCGCGCCGccgUACa -3'
miRNA:   3'- uCGCG-CGUC---UAGUUGGCGUGGCa--AUG- -5'
26649 5' -54.2 NC_005808.1 + 8785 0.77 0.173623
Target:  5'- cGCgGCGCAcgaugGGUCGGCCGCGCCGgucagUACc -3'
miRNA:   3'- uCG-CGCGU-----CUAGUUGGCGUGGCa----AUG- -5'
26649 5' -54.2 NC_005808.1 + 29575 0.75 0.210867
Target:  5'- -uCGCGuCAGGUCGGCCGCGCCcagGCg -3'
miRNA:   3'- ucGCGC-GUCUAGUUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 34761 0.75 0.228835
Target:  5'- cGUGCGUAGAUCGccaGCUGC-UCGUUGCg -3'
miRNA:   3'- uCGCGCGUCUAGU---UGGCGuGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 21238 0.75 0.235107
Target:  5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3'
miRNA:   3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5'
26649 5' -54.2 NC_005808.1 + 28159 0.74 0.261643
Target:  5'- cGGUG-GuCAGAUCGACCaCGCCGUUGCc -3'
miRNA:   3'- -UCGCgC-GUCUAGUUGGcGUGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 12449 0.74 0.268647
Target:  5'- aAGCGCGCAGGcaUCGACuCGCcgACCGacGCg -3'
miRNA:   3'- -UCGCGCGUCU--AGUUG-GCG--UGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 21962 0.73 0.275802
Target:  5'- cAGUGCGCGGAaCGACCGauaGCCGg--- -3'
miRNA:   3'- -UCGCGCGUCUaGUUGGCg--UGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 28236 0.73 0.298178
Target:  5'- -aCGCGCGGGUCgGACUGCGCCaggcucaccauGUUGCg -3'
miRNA:   3'- ucGCGCGUCUAG-UUGGCGUGG-----------CAAUG- -5'
26649 5' -54.2 NC_005808.1 + 19512 0.72 0.330164
Target:  5'- uGGCGUGCAGccCGAgaagucCCGCACCG-UGCa -3'
miRNA:   3'- -UCGCGCGUCuaGUU------GGCGUGGCaAUG- -5'
26649 5' -54.2 NC_005808.1 + 33928 0.72 0.330164
Target:  5'- gGGCGCGCAG--CAGCCGCugCa---- -3'
miRNA:   3'- -UCGCGCGUCuaGUUGGCGugGcaaug -5'
26649 5' -54.2 NC_005808.1 + 27824 0.71 0.382739
Target:  5'- cGCGCGCGcugcccgcGGUggcgcCGGCCGCGCCGcUGCu -3'
miRNA:   3'- uCGCGCGU--------CUA-----GUUGGCGUGGCaAUG- -5'
26649 5' -54.2 NC_005808.1 + 41831 0.71 0.382739
Target:  5'- cGCGCGCAGAgacagCgAGCCG-ACCGUgGCc -3'
miRNA:   3'- uCGCGCGUCUa----G-UUGGCgUGGCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 605 0.71 0.392026
Target:  5'- cGCcUGCGGGUCGGCCagcaGCGCCGUggACa -3'
miRNA:   3'- uCGcGCGUCUAGUUGG----CGUGGCAa-UG- -5'
26649 5' -54.2 NC_005808.1 + 4036 0.71 0.392026
Target:  5'- uGcCGCGCGGGUCGAgCGCAgCCGg--- -3'
miRNA:   3'- uC-GCGCGUCUAGUUgGCGU-GGCaaug -5'
26649 5' -54.2 NC_005808.1 + 39116 0.71 0.411035
Target:  5'- -cCGCGCAGucccgcCAACCGCGCCGc--- -3'
miRNA:   3'- ucGCGCGUCua----GUUGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 9280 0.71 0.411035
Target:  5'- cGCGcCGCAGAaCGugcGCCGCGCCGc--- -3'
miRNA:   3'- uCGC-GCGUCUaGU---UGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 14306 0.71 0.411035
Target:  5'- uGCGCGUGGAcgacgcacUUAACCGCGCCa---- -3'
miRNA:   3'- uCGCGCGUCU--------AGUUGGCGUGGcaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.