Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26649 | 5' | -54.2 | NC_005808.1 | + | 2134 | 0.78 | 0.130604 |
Target: 5'- cGUGCaGCAGccgGUCAACCGCGCCGccgUACa -3' miRNA: 3'- uCGCG-CGUC---UAGUUGGCGUGGCa--AUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 8144 | 0.69 | 0.524795 |
Target: 5'- gGGCGUGCGGGugUCGG-CGCugCGUcccUGCg -3' miRNA: 3'- -UCGCGCGUCU--AGUUgGCGugGCA---AUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 14642 | 0.69 | 0.524795 |
Target: 5'- cGGUGCGCAGAUUGAUaccuUGCACCuugGCc -3' miRNA: 3'- -UCGCGCGUCUAGUUG----GCGUGGcaaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 28076 | 0.69 | 0.513901 |
Target: 5'- cAGCGgGCAGGU-GGCCGCGgCGUc-- -3' miRNA: 3'- -UCGCgCGUCUAgUUGGCGUgGCAaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 22081 | 0.69 | 0.512816 |
Target: 5'- cGGCGCGCGGcUCGAUgGCgugaaugACCGUaACc -3' miRNA: 3'- -UCGCGCGUCuAGUUGgCG-------UGGCAaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 35052 | 0.69 | 0.492399 |
Target: 5'- uGGCGcCGCAGAUCgAGCaCGcCGCCGa--- -3' miRNA: 3'- -UCGC-GCGUCUAG-UUG-GC-GUGGCaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 28573 | 0.69 | 0.481804 |
Target: 5'- cGGCGCGCAcGUCGGCCaccgGCAgCGUg-- -3' miRNA: 3'- -UCGCGCGUcUAGUUGG----CGUgGCAaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 11431 | 0.69 | 0.481804 |
Target: 5'- cGGCGUGCAGGUCG-CCGauaaggcgcgaCACCGgcaGCu -3' miRNA: 3'- -UCGCGCGUCUAGUuGGC-----------GUGGCaa-UG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 23742 | 0.69 | 0.470279 |
Target: 5'- uGGCGCGCAGcagCGccaugccggcgccACCGgGCCGaUGCg -3' miRNA: 3'- -UCGCGCGUCua-GU-------------UGGCgUGGCaAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 15588 | 0.7 | 0.440593 |
Target: 5'- cGCGCuGCGGAUgcACCGCGCCa---- -3' miRNA: 3'- uCGCG-CGUCUAguUGGCGUGGcaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 4036 | 0.71 | 0.392026 |
Target: 5'- uGcCGCGCGGGUCGAgCGCAgCCGg--- -3' miRNA: 3'- uC-GCGCGUCUAGUUgGCGU-GGCaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 605 | 0.71 | 0.392026 |
Target: 5'- cGCcUGCGGGUCGGCCagcaGCGCCGUggACa -3' miRNA: 3'- uCGcGCGUCUAGUUGG----CGUGGCAa-UG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 27824 | 0.71 | 0.382739 |
Target: 5'- cGCGCGCGcugcccgcGGUggcgcCGGCCGCGCCGcUGCu -3' miRNA: 3'- uCGCGCGU--------CUA-----GUUGGCGUGGCaAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 33928 | 0.72 | 0.330164 |
Target: 5'- gGGCGCGCAG--CAGCCGCugCa---- -3' miRNA: 3'- -UCGCGCGUCuaGUUGGCGugGcaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 28236 | 0.73 | 0.298178 |
Target: 5'- -aCGCGCGGGUCgGACUGCGCCaggcucaccauGUUGCg -3' miRNA: 3'- ucGCGCGUCUAG-UUGGCGUGG-----------CAAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 21962 | 0.73 | 0.275802 |
Target: 5'- cAGUGCGCGGAaCGACCGauaGCCGg--- -3' miRNA: 3'- -UCGCGCGUCUaGUUGGCg--UGGCaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 28159 | 0.74 | 0.261643 |
Target: 5'- cGGUG-GuCAGAUCGACCaCGCCGUUGCc -3' miRNA: 3'- -UCGCgC-GUCUAGUUGGcGUGGCAAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 29575 | 0.75 | 0.210867 |
Target: 5'- -uCGCGuCAGGUCGGCCGCGCCcagGCg -3' miRNA: 3'- ucGCGC-GUCUAGUUGGCGUGGcaaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 8785 | 0.77 | 0.173623 |
Target: 5'- cGCgGCGCAcgaugGGUCGGCCGCGCCGgucagUACc -3' miRNA: 3'- uCG-CGCGU-----CUAGUUGGCGUGGCa----AUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 13391 | 0.79 | 0.126889 |
Target: 5'- cAGCGCGCGGuuguaGGCgGCAUCGUUGCg -3' miRNA: 3'- -UCGCGCGUCuag--UUGgCGUGGCAAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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