miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 23655 0.68 0.535776
Target:  5'- cGGCGgGCAG--CAACUGCACCag-GCg -3'
miRNA:   3'- -UCGCgCGUCuaGUUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 23742 0.69 0.470279
Target:  5'- uGGCGCGCAGcagCGccaugccggcgccACCGgGCCGaUGCg -3'
miRNA:   3'- -UCGCGCGUCua-GU-------------UGGCgUGGCaAUG- -5'
26649 5' -54.2 NC_005808.1 + 11431 0.69 0.481804
Target:  5'- cGGCGUGCAGGUCG-CCGauaaggcgcgaCACCGgcaGCu -3'
miRNA:   3'- -UCGCGCGUCUAGUuGGC-----------GUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 28573 0.69 0.481804
Target:  5'- cGGCGCGCAcGUCGGCCaccgGCAgCGUg-- -3'
miRNA:   3'- -UCGCGCGUcUAGUUGG----CGUgGCAaug -5'
26649 5' -54.2 NC_005808.1 + 35052 0.69 0.492399
Target:  5'- uGGCGcCGCAGAUCgAGCaCGcCGCCGa--- -3'
miRNA:   3'- -UCGC-GCGUCUAG-UUG-GC-GUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 22081 0.69 0.512816
Target:  5'- cGGCGCGCGGcUCGAUgGCgugaaugACCGUaACc -3'
miRNA:   3'- -UCGCGCGUCuAGUUGgCG-------UGGCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 28076 0.69 0.513901
Target:  5'- cAGCGgGCAGGU-GGCCGCGgCGUc-- -3'
miRNA:   3'- -UCGCgCGUCUAgUUGGCGUgGCAaug -5'
26649 5' -54.2 NC_005808.1 + 14642 0.69 0.524795
Target:  5'- cGGUGCGCAGAUUGAUaccuUGCACCuugGCc -3'
miRNA:   3'- -UCGCGCGUCUAGUUG----GCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 8144 0.69 0.524795
Target:  5'- gGGCGUGCGGGugUCGG-CGCugCGUcccUGCg -3'
miRNA:   3'- -UCGCGCGUCU--AGUUgGCGugGCA---AUG- -5'
26649 5' -54.2 NC_005808.1 + 15588 0.7 0.440593
Target:  5'- cGCGCuGCGGAUgcACCGCGCCa---- -3'
miRNA:   3'- uCGCG-CGUCUAguUGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 4036 0.71 0.392026
Target:  5'- uGcCGCGCGGGUCGAgCGCAgCCGg--- -3'
miRNA:   3'- uC-GCGCGUCUAGUUgGCGU-GGCaaug -5'
26649 5' -54.2 NC_005808.1 + 605 0.71 0.392026
Target:  5'- cGCcUGCGGGUCGGCCagcaGCGCCGUggACa -3'
miRNA:   3'- uCGcGCGUCUAGUUGG----CGUGGCAa-UG- -5'
26649 5' -54.2 NC_005808.1 + 2134 0.78 0.130604
Target:  5'- cGUGCaGCAGccgGUCAACCGCGCCGccgUACa -3'
miRNA:   3'- uCGCG-CGUC---UAGUUGGCGUGGCa--AUG- -5'
26649 5' -54.2 NC_005808.1 + 8785 0.77 0.173623
Target:  5'- cGCgGCGCAcgaugGGUCGGCCGCGCCGgucagUACc -3'
miRNA:   3'- uCG-CGCGU-----CUAGUUGGCGUGGCa----AUG- -5'
26649 5' -54.2 NC_005808.1 + 29575 0.75 0.210867
Target:  5'- -uCGCGuCAGGUCGGCCGCGCCcagGCg -3'
miRNA:   3'- ucGCGC-GUCUAGUUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 28159 0.74 0.261643
Target:  5'- cGGUG-GuCAGAUCGACCaCGCCGUUGCc -3'
miRNA:   3'- -UCGCgC-GUCUAGUUGGcGUGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 21962 0.73 0.275802
Target:  5'- cAGUGCGCGGAaCGACCGauaGCCGg--- -3'
miRNA:   3'- -UCGCGCGUCUaGUUGGCg--UGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 28236 0.73 0.298178
Target:  5'- -aCGCGCGGGUCgGACUGCGCCaggcucaccauGUUGCg -3'
miRNA:   3'- ucGCGCGUCUAG-UUGGCGUGG-----------CAAUG- -5'
26649 5' -54.2 NC_005808.1 + 33928 0.72 0.330164
Target:  5'- gGGCGCGCAG--CAGCCGCugCa---- -3'
miRNA:   3'- -UCGCGCGUCuaGUUGGCGugGcaaug -5'
26649 5' -54.2 NC_005808.1 + 27824 0.71 0.382739
Target:  5'- cGCGCGCGcugcccgcGGUggcgcCGGCCGCGCCGcUGCu -3'
miRNA:   3'- uCGCGCGU--------CUA-----GUUGGCGUGGCaAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.