miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 7703 0.68 0.535776
Target:  5'- gAGCcgGCGUGGGUCgAGCCGCGCCc---- -3'
miRNA:   3'- -UCG--CGCGUCUAG-UUGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 6325 1.09 0.000875
Target:  5'- cAGCGCGCAGAUCAACCGCACCGUUACc -3'
miRNA:   3'- -UCGCGCGUCUAGUUGGCGUGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 34761 0.75 0.228835
Target:  5'- cGUGCGUAGAUCGccaGCUGC-UCGUUGCg -3'
miRNA:   3'- uCGCGCGUCUAGU---UGGCGuGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 27191 0.7 0.440593
Target:  5'- uGCGCGCGGcGUCAGCUuugcaggcuaagGCACUGgUACu -3'
miRNA:   3'- uCGCGCGUC-UAGUUGG------------CGUGGCaAUG- -5'
26649 5' -54.2 NC_005808.1 + 11263 0.69 0.481804
Target:  5'- -aUGCGCGGcAUUGACCGCACCa---- -3'
miRNA:   3'- ucGCGCGUC-UAGUUGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 21238 0.75 0.235107
Target:  5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3'
miRNA:   3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5'
26649 5' -54.2 NC_005808.1 + 14306 0.71 0.411035
Target:  5'- uGCGCGUGGAcgacgcacUUAACCGCGCCa---- -3'
miRNA:   3'- uCGCGCGUCU--------AGUUGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 39116 0.71 0.411035
Target:  5'- -cCGCGCAGucccgcCAACCGCGCCGc--- -3'
miRNA:   3'- ucGCGCGUCua----GUUGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 13633 0.69 0.524795
Target:  5'- gAGCGCGCGu-UCAACauCGCCGUggGCa -3'
miRNA:   3'- -UCGCGCGUcuAGUUGgcGUGGCAa-UG- -5'
26649 5' -54.2 NC_005808.1 + 28369 0.68 0.535776
Target:  5'- gAGCGCGCcGAguucuUCAAguuCUGCGCCGUg-- -3'
miRNA:   3'- -UCGCGCGuCU-----AGUU---GGCGUGGCAaug -5'
26649 5' -54.2 NC_005808.1 + 13132 0.66 0.704941
Target:  5'- gAGCGCcaauucaacauGCAGA-CGGCCGCACUcaaGCa -3'
miRNA:   3'- -UCGCG-----------CGUCUaGUUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 19512 0.72 0.330164
Target:  5'- uGGCGUGCAGccCGAgaagucCCGCACCG-UGCa -3'
miRNA:   3'- -UCGCGCGUCuaGUU------GGCGUGGCaAUG- -5'
26649 5' -54.2 NC_005808.1 + 12449 0.74 0.268647
Target:  5'- aAGCGCGCAGGcaUCGACuCGCcgACCGacGCg -3'
miRNA:   3'- -UCGCGCGUCU--AGUUG-GCG--UGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 13237 0.69 0.524795
Target:  5'- gGGCGCcCAGcgCGGCCGaCACUGgccgACa -3'
miRNA:   3'- -UCGCGcGUCuaGUUGGC-GUGGCaa--UG- -5'
26649 5' -54.2 NC_005808.1 + 11423 0.69 0.524795
Target:  5'- gGGCGaGCAGGUCGccACCGUACUGc--- -3'
miRNA:   3'- -UCGCgCGUCUAGU--UGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 41831 0.71 0.382739
Target:  5'- cGCGCGCAGAgacagCgAGCCG-ACCGUgGCc -3'
miRNA:   3'- uCGCGCGUCUa----G-UUGGCgUGGCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 10882 0.68 0.535776
Target:  5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3'
miRNA:   3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 25876 0.68 0.546836
Target:  5'- cGGCccgGUGCAGAUCAACgauaccgagCGCGCCGcgcGCa -3'
miRNA:   3'- -UCG---CGCGUCUAGUUG---------GCGUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 9280 0.71 0.411035
Target:  5'- cGCGcCGCAGAaCGugcGCCGCGCCGc--- -3'
miRNA:   3'- uCGC-GCGUCUaGU---UGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 25686 0.69 0.492399
Target:  5'- cGCGCuGCuGG-CGACCGCGCCGc--- -3'
miRNA:   3'- uCGCG-CGuCUaGUUGGCGUGGCaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.