miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 42360 0.66 0.68252
Target:  5'- aGGCGCGCucuuccguccAGggCGuGCCGUACCGggGg -3'
miRNA:   3'- -UCGCGCG----------UCuaGU-UGGCGUGGCaaUg -5'
26649 5' -54.2 NC_005808.1 + 41831 0.71 0.382739
Target:  5'- cGCGCGCAGAgacagCgAGCCG-ACCGUgGCc -3'
miRNA:   3'- uCGCGCGUCUa----G-UUGGCgUGGCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 40085 0.68 0.535776
Target:  5'- cAGCGCGUGcGcgCGcuuGCCGCcCUGUUGCa -3'
miRNA:   3'- -UCGCGCGU-CuaGU---UGGCGuGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 39655 0.66 0.693763
Target:  5'- aGGCGCgGCGGGUCAuaGCUGC-UCGUc-- -3'
miRNA:   3'- -UCGCG-CGUCUAGU--UGGCGuGGCAaug -5'
26649 5' -54.2 NC_005808.1 + 39116 0.71 0.411035
Target:  5'- -cCGCGCAGucccgcCAACCGCGCCGc--- -3'
miRNA:   3'- ucGCGCGUCua----GUUGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 38471 0.66 0.704941
Target:  5'- uGGCGgGCAuGUUGGCCGCGagcaCGUcGCg -3'
miRNA:   3'- -UCGCgCGUcUAGUUGGCGUg---GCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 37646 0.68 0.557968
Target:  5'- cAGCGCGauacgCGGCUGCAUCGUgGCg -3'
miRNA:   3'- -UCGCGCgucuaGUUGGCGUGGCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 36489 0.67 0.6144
Target:  5'- cAGCGCagGCcGGUCuuGCCGCAgCGuUUGCa -3'
miRNA:   3'- -UCGCG--CGuCUAGu-UGGCGUgGC-AAUG- -5'
26649 5' -54.2 NC_005808.1 + 35178 0.66 0.648533
Target:  5'- -uCGaC-CAGAUCGACCGCGCCcagcagGUUGCc -3'
miRNA:   3'- ucGC-GcGUCUAGUUGGCGUGG------CAAUG- -5'
26649 5' -54.2 NC_005808.1 + 35052 0.69 0.492399
Target:  5'- uGGCGcCGCAGAUCgAGCaCGcCGCCGa--- -3'
miRNA:   3'- -UCGC-GCGUCUAG-UUG-GC-GUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 34763 0.66 0.681393
Target:  5'- cGUGCGCcuGGUCAucgugcaGCCGCGCCu---- -3'
miRNA:   3'- uCGCGCGu-CUAGU-------UGGCGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 34761 0.75 0.228835
Target:  5'- cGUGCGUAGAUCGccaGCUGC-UCGUUGCg -3'
miRNA:   3'- uCGCGCGUCUAGU---UGGCGuGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 33928 0.72 0.330164
Target:  5'- gGGCGCGCAG--CAGCCGCugCa---- -3'
miRNA:   3'- -UCGCGCGUCuaGUUGGCGugGcaaug -5'
26649 5' -54.2 NC_005808.1 + 31768 0.66 0.693763
Target:  5'- cGGCGgGCuGGUCAggcgguGCUGCAgCaGUUACu -3'
miRNA:   3'- -UCGCgCGuCUAGU------UGGCGUgG-CAAUG- -5'
26649 5' -54.2 NC_005808.1 + 31498 0.66 0.648533
Target:  5'- cGC-CGCAGAUCGuggCGuCGCCGUUGa -3'
miRNA:   3'- uCGcGCGUCUAGUug-GC-GUGGCAAUg -5'
26649 5' -54.2 NC_005808.1 + 31054 0.66 0.704941
Target:  5'- cGCGCgugaGCAGAUCGuccACCGUcacGCCGa--- -3'
miRNA:   3'- uCGCG----CGUCUAGU---UGGCG---UGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 29575 0.75 0.210867
Target:  5'- -uCGCGuCAGGUCGGCCGCGCCcagGCg -3'
miRNA:   3'- ucGCGC-GUCUAGUUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 28823 0.66 0.648533
Target:  5'- uGCGCGCcGAgaagCGcACCGCGCUGg--- -3'
miRNA:   3'- uCGCGCGuCUa---GU-UGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 28573 0.69 0.481804
Target:  5'- cGGCGCGCAcGUCGGCCaccgGCAgCGUg-- -3'
miRNA:   3'- -UCGCGCGUcUAGUUGG----CGUgGCAaug -5'
26649 5' -54.2 NC_005808.1 + 28369 0.68 0.535776
Target:  5'- gAGCGCGCcGAguucuUCAAguuCUGCGCCGUg-- -3'
miRNA:   3'- -UCGCGCGuCU-----AGUU---GGCGUGGCAaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.