miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 28236 0.73 0.298178
Target:  5'- -aCGCGCGGGUCgGACUGCGCCaggcucaccauGUUGCg -3'
miRNA:   3'- ucGCGCGUCUAG-UUGGCGUGG-----------CAAUG- -5'
26649 5' -54.2 NC_005808.1 + 28202 0.66 0.693763
Target:  5'- cGGCGCcuugucCAGGUCGGCCaCGCCGa--- -3'
miRNA:   3'- -UCGCGc-----GUCUAGUUGGcGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 28159 0.74 0.261643
Target:  5'- cGGUG-GuCAGAUCGACCaCGCCGUUGCc -3'
miRNA:   3'- -UCGCgC-GUCUAGUUGGcGUGGCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 28076 0.69 0.513901
Target:  5'- cAGCGgGCAGGU-GGCCGCGgCGUc-- -3'
miRNA:   3'- -UCGCgCGUCUAgUUGGCGUgGCAaug -5'
26649 5' -54.2 NC_005808.1 + 27824 0.71 0.382739
Target:  5'- cGCGCGCGcugcccgcGGUggcgcCGGCCGCGCCGcUGCu -3'
miRNA:   3'- uCGCGCGU--------CUA-----GUUGGCGUGGCaAUG- -5'
26649 5' -54.2 NC_005808.1 + 27796 0.68 0.557968
Target:  5'- cGCGCGCcGcgCAGCCGCAgcaCGUc-- -3'
miRNA:   3'- uCGCGCGuCuaGUUGGCGUg--GCAaug -5'
26649 5' -54.2 NC_005808.1 + 27419 0.67 0.603041
Target:  5'- cGCGCGCcuGGcgC-ACCGCGCCcg-GCg -3'
miRNA:   3'- uCGCGCG--UCuaGuUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 27191 0.7 0.440593
Target:  5'- uGCGCGCGGcGUCAGCUuugcaggcuaagGCACUGgUACu -3'
miRNA:   3'- uCGCGCGUC-UAGUUGG------------CGUGGCaAUG- -5'
26649 5' -54.2 NC_005808.1 + 25876 0.68 0.546836
Target:  5'- cGGCccgGUGCAGAUCAACgauaccgagCGCGCCGcgcGCa -3'
miRNA:   3'- -UCG---CGCGUCUAGUUG---------GCGUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 25801 0.67 0.637157
Target:  5'- cGGCGCGCucGGuAUCGuugauCUGCACCGg--- -3'
miRNA:   3'- -UCGCGCG--UC-UAGUu----GGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 25686 0.69 0.492399
Target:  5'- cGCGCuGCuGG-CGACCGCGCCGc--- -3'
miRNA:   3'- uCGCG-CGuCUaGUUGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 25088 0.66 0.693763
Target:  5'- --aGCGCAGcgCGcCCGgCGCCGUgggaUACa -3'
miRNA:   3'- ucgCGCGUCuaGUuGGC-GUGGCA----AUG- -5'
26649 5' -54.2 NC_005808.1 + 24225 0.66 0.68252
Target:  5'- aAGCGCGCAGccGUCGaggcGCUGgGCCaGgcGCg -3'
miRNA:   3'- -UCGCGCGUC--UAGU----UGGCgUGG-CaaUG- -5'
26649 5' -54.2 NC_005808.1 + 23742 0.69 0.470279
Target:  5'- uGGCGCGCAGcagCGccaugccggcgccACCGgGCCGaUGCg -3'
miRNA:   3'- -UCGCGCGUCua-GU-------------UGGCgUGGCaAUG- -5'
26649 5' -54.2 NC_005808.1 + 23655 0.68 0.535776
Target:  5'- cGGCGgGCAG--CAACUGCACCag-GCg -3'
miRNA:   3'- -UCGCgCGUCuaGUUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 23417 0.68 0.545727
Target:  5'- gAGCGCGCcGGUCAgugcgacGCCG-GCCGggaUGCg -3'
miRNA:   3'- -UCGCGCGuCUAGU-------UGGCgUGGCa--AUG- -5'
26649 5' -54.2 NC_005808.1 + 22671 0.66 0.656488
Target:  5'- cGCGCGCGGggCGcuucuucgugcaagAUCGCaACCGcgGCg -3'
miRNA:   3'- uCGCGCGUCuaGU--------------UGGCG-UGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 22081 0.69 0.512816
Target:  5'- cGGCGCGCGGcUCGAUgGCgugaaugACCGUaACc -3'
miRNA:   3'- -UCGCGCGUCuAGUUGgCG-------UGGCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 21962 0.73 0.275802
Target:  5'- cAGUGCGCGGAaCGACCGauaGCCGg--- -3'
miRNA:   3'- -UCGCGCGUCUaGUUGGCg--UGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 21238 0.75 0.235107
Target:  5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3'
miRNA:   3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.