Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26649 | 5' | -54.2 | NC_005808.1 | + | 23417 | 0.68 | 0.545727 |
Target: 5'- gAGCGCGCcGGUCAgugcgacGCCG-GCCGggaUGCg -3' miRNA: 3'- -UCGCGCGuCUAGU-------UGGCgUGGCa--AUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 37646 | 0.68 | 0.557968 |
Target: 5'- cAGCGCGauacgCGGCUGCAUCGUgGCg -3' miRNA: 3'- -UCGCGCgucuaGUUGGCGUGGCAaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 27796 | 0.68 | 0.557968 |
Target: 5'- cGCGCGCcGcgCAGCCGCAgcaCGUc-- -3' miRNA: 3'- uCGCGCGuCuaGUUGGCGUg--GCAaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 20618 | 0.68 | 0.557968 |
Target: 5'- cGGCGuCGCAGGUCGgugucgGCCuGCGCuCGUUc- -3' miRNA: 3'- -UCGC-GCGUCUAGU------UGG-CGUG-GCAAug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 11431 | 0.69 | 0.481804 |
Target: 5'- cGGCGUGCAGGUCG-CCGauaaggcgcgaCACCGgcaGCu -3' miRNA: 3'- -UCGCGCGUCUAGUuGGC-----------GUGGCaa-UG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 23742 | 0.69 | 0.470279 |
Target: 5'- uGGCGCGCAGcagCGccaugccggcgccACCGgGCCGaUGCg -3' miRNA: 3'- -UCGCGCGUCua-GU-------------UGGCgUGGCaAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 13633 | 0.69 | 0.524795 |
Target: 5'- gAGCGCGCGu-UCAACauCGCCGUggGCa -3' miRNA: 3'- -UCGCGCGUcuAGUUGgcGUGGCAa-UG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 11423 | 0.69 | 0.524795 |
Target: 5'- gGGCGaGCAGGUCGccACCGUACUGc--- -3' miRNA: 3'- -UCGCgCGUCUAGU--UGGCGUGGCaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 13237 | 0.69 | 0.524795 |
Target: 5'- gGGCGCcCAGcgCGGCCGaCACUGgccgACa -3' miRNA: 3'- -UCGCGcGUCuaGUUGGC-GUGGCaa--UG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 25686 | 0.69 | 0.492399 |
Target: 5'- cGCGCuGCuGG-CGACCGCGCCGc--- -3' miRNA: 3'- uCGCG-CGuCUaGUUGGCGUGGCaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 11263 | 0.69 | 0.481804 |
Target: 5'- -aUGCGCGGcAUUGACCGCACCa---- -3' miRNA: 3'- ucGCGCGUC-UAGUUGGCGUGGcaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 8144 | 0.69 | 0.524795 |
Target: 5'- gGGCGUGCGGGugUCGG-CGCugCGUcccUGCg -3' miRNA: 3'- -UCGCGCGUCU--AGUUgGCGugGCA---AUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 14642 | 0.69 | 0.524795 |
Target: 5'- cGGUGCGCAGAUUGAUaccuUGCACCuugGCc -3' miRNA: 3'- -UCGCGCGUCUAGUUG----GCGUGGcaaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 28076 | 0.69 | 0.513901 |
Target: 5'- cAGCGgGCAGGU-GGCCGCGgCGUc-- -3' miRNA: 3'- -UCGCgCGUCUAgUUGGCGUgGCAaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 22081 | 0.69 | 0.512816 |
Target: 5'- cGGCGCGCGGcUCGAUgGCgugaaugACCGUaACc -3' miRNA: 3'- -UCGCGCGUCuAGUUGgCG-------UGGCAaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 35052 | 0.69 | 0.492399 |
Target: 5'- uGGCGcCGCAGAUCgAGCaCGcCGCCGa--- -3' miRNA: 3'- -UCGC-GCGUCUAG-UUG-GC-GUGGCaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 28573 | 0.69 | 0.481804 |
Target: 5'- cGGCGCGCAcGUCGGCCaccgGCAgCGUg-- -3' miRNA: 3'- -UCGCGCGUcUAGUUGG----CGUgGCAaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 27191 | 0.7 | 0.440593 |
Target: 5'- uGCGCGCGGcGUCAGCUuugcaggcuaagGCACUGgUACu -3' miRNA: 3'- uCGCGCGUC-UAGUUGG------------CGUGGCaAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 15588 | 0.7 | 0.440593 |
Target: 5'- cGCGCuGCGGAUgcACCGCGCCa---- -3' miRNA: 3'- uCGCG-CGUCUAguUGGCGUGGcaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 39116 | 0.71 | 0.411035 |
Target: 5'- -cCGCGCAGucccgcCAACCGCGCCGc--- -3' miRNA: 3'- ucGCGCGUCua----GUUGGCGUGGCaaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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