Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26649 | 5' | -54.2 | NC_005808.1 | + | 10063 | 0.68 | 0.546836 |
Target: 5'- gGGCGCGCGGcacuuUCGACCcCGCCa---- -3' miRNA: 3'- -UCGCGCGUCu----AGUUGGcGUGGcaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 7149 | 0.68 | 0.557968 |
Target: 5'- gGGCGCGCcguGGGUaGGCCGCGgCGUc-- -3' miRNA: 3'- -UCGCGCG---UCUAgUUGGCGUgGCAaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 13727 | 0.67 | 0.607582 |
Target: 5'- uGCGCGuCAuAUCAccaaggacauggacgGCCGCGCCGgacuUGCu -3' miRNA: 3'- uCGCGC-GUcUAGU---------------UGGCGUGGCa---AUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 36489 | 0.67 | 0.6144 |
Target: 5'- cAGCGCagGCcGGUCuuGCCGCAgCGuUUGCa -3' miRNA: 3'- -UCGCG--CGuCUAGu-UGGCGUgGC-AAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 20614 | 0.67 | 0.625775 |
Target: 5'- cAGCaaGCGGGggcGCCGCAUCGUgugGCg -3' miRNA: 3'- -UCGcgCGUCUaguUGGCGUGGCAa--UG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 14371 | 0.67 | 0.637157 |
Target: 5'- cGCGCGcCAGuUCAgcaacgacguggGCCGCAUCGccgACa -3' miRNA: 3'- uCGCGC-GUCuAGU------------UGGCGUGGCaa-UG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 35178 | 0.66 | 0.648533 |
Target: 5'- -uCGaC-CAGAUCGACCGCGCCcagcagGUUGCc -3' miRNA: 3'- ucGC-GcGUCUAGUUGGCGUGG------CAAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 31498 | 0.66 | 0.648533 |
Target: 5'- cGC-CGCAGAUCGuggCGuCGCCGUUGa -3' miRNA: 3'- uCGcGCGUCUAGUug-GC-GUGGCAAUg -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 28823 | 0.66 | 0.648533 |
Target: 5'- uGCGCGCcGAgaagCGcACCGCGCUGg--- -3' miRNA: 3'- uCGCGCGuCUa---GU-UGGCGUGGCaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 1157 | 0.66 | 0.648533 |
Target: 5'- cGCGCGacacggccaAGGcaaUCuACCGCGCgCGUUACu -3' miRNA: 3'- uCGCGCg--------UCU---AGuUGGCGUG-GCAAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 20736 | 0.66 | 0.648533 |
Target: 5'- uGCGCGCAuGAgcaauuaCGACCcCACCGUa-- -3' miRNA: 3'- uCGCGCGU-CUa------GUUGGcGUGGCAaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 22671 | 0.66 | 0.656488 |
Target: 5'- cGCGCGCGGggCGcuucuucgugcaagAUCGCaACCGcgGCg -3' miRNA: 3'- uCGCGCGUCuaGU--------------UGGCG-UGGCaaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 42360 | 0.66 | 0.68252 |
Target: 5'- aGGCGCGCucuuccguccAGggCGuGCCGUACCGggGg -3' miRNA: 3'- -UCGCGCG----------UCuaGU-UGGCGUGGCaaUg -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 24225 | 0.66 | 0.68252 |
Target: 5'- aAGCGCGCAGccGUCGaggcGCUGgGCCaGgcGCg -3' miRNA: 3'- -UCGCGCGUC--UAGU----UGGCgUGG-CaaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 31768 | 0.66 | 0.693763 |
Target: 5'- cGGCGgGCuGGUCAggcgguGCUGCAgCaGUUACu -3' miRNA: 3'- -UCGCgCGuCUAGU------UGGCGUgG-CAAUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 39655 | 0.66 | 0.693763 |
Target: 5'- aGGCGCgGCGGGUCAuaGCUGC-UCGUc-- -3' miRNA: 3'- -UCGCG-CGUCUAGU--UGGCGuGGCAaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 38471 | 0.66 | 0.704941 |
Target: 5'- uGGCGgGCAuGUUGGCCGCGagcaCGUcGCg -3' miRNA: 3'- -UCGCgCGUcUAGUUGGCGUg---GCAaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 31054 | 0.66 | 0.704941 |
Target: 5'- cGCGCgugaGCAGAUCGuccACCGUcacGCCGa--- -3' miRNA: 3'- uCGCG----CGUCUAGU---UGGCG---UGGCaaug -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 13132 | 0.66 | 0.704941 |
Target: 5'- gAGCGCcaauucaacauGCAGA-CGGCCGCACUcaaGCa -3' miRNA: 3'- -UCGCG-----------CGUCUaGUUGGCGUGGcaaUG- -5' |
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26649 | 5' | -54.2 | NC_005808.1 | + | 27191 | 0.7 | 0.440593 |
Target: 5'- uGCGCGCGGcGUCAGCUuugcaggcuaagGCACUGgUACu -3' miRNA: 3'- uCGCGCGUC-UAGUUGG------------CGUGGCaAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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