miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26649 5' -54.2 NC_005808.1 + 10063 0.68 0.546836
Target:  5'- gGGCGCGCGGcacuuUCGACCcCGCCa---- -3'
miRNA:   3'- -UCGCGCGUCu----AGUUGGcGUGGcaaug -5'
26649 5' -54.2 NC_005808.1 + 7149 0.68 0.557968
Target:  5'- gGGCGCGCcguGGGUaGGCCGCGgCGUc-- -3'
miRNA:   3'- -UCGCGCG---UCUAgUUGGCGUgGCAaug -5'
26649 5' -54.2 NC_005808.1 + 13727 0.67 0.607582
Target:  5'- uGCGCGuCAuAUCAccaaggacauggacgGCCGCGCCGgacuUGCu -3'
miRNA:   3'- uCGCGC-GUcUAGU---------------UGGCGUGGCa---AUG- -5'
26649 5' -54.2 NC_005808.1 + 36489 0.67 0.6144
Target:  5'- cAGCGCagGCcGGUCuuGCCGCAgCGuUUGCa -3'
miRNA:   3'- -UCGCG--CGuCUAGu-UGGCGUgGC-AAUG- -5'
26649 5' -54.2 NC_005808.1 + 20614 0.67 0.625775
Target:  5'- cAGCaaGCGGGggcGCCGCAUCGUgugGCg -3'
miRNA:   3'- -UCGcgCGUCUaguUGGCGUGGCAa--UG- -5'
26649 5' -54.2 NC_005808.1 + 14371 0.67 0.637157
Target:  5'- cGCGCGcCAGuUCAgcaacgacguggGCCGCAUCGccgACa -3'
miRNA:   3'- uCGCGC-GUCuAGU------------UGGCGUGGCaa-UG- -5'
26649 5' -54.2 NC_005808.1 + 35178 0.66 0.648533
Target:  5'- -uCGaC-CAGAUCGACCGCGCCcagcagGUUGCc -3'
miRNA:   3'- ucGC-GcGUCUAGUUGGCGUGG------CAAUG- -5'
26649 5' -54.2 NC_005808.1 + 31498 0.66 0.648533
Target:  5'- cGC-CGCAGAUCGuggCGuCGCCGUUGa -3'
miRNA:   3'- uCGcGCGUCUAGUug-GC-GUGGCAAUg -5'
26649 5' -54.2 NC_005808.1 + 28823 0.66 0.648533
Target:  5'- uGCGCGCcGAgaagCGcACCGCGCUGg--- -3'
miRNA:   3'- uCGCGCGuCUa---GU-UGGCGUGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 1157 0.66 0.648533
Target:  5'- cGCGCGacacggccaAGGcaaUCuACCGCGCgCGUUACu -3'
miRNA:   3'- uCGCGCg--------UCU---AGuUGGCGUG-GCAAUG- -5'
26649 5' -54.2 NC_005808.1 + 20736 0.66 0.648533
Target:  5'- uGCGCGCAuGAgcaauuaCGACCcCACCGUa-- -3'
miRNA:   3'- uCGCGCGU-CUa------GUUGGcGUGGCAaug -5'
26649 5' -54.2 NC_005808.1 + 22671 0.66 0.656488
Target:  5'- cGCGCGCGGggCGcuucuucgugcaagAUCGCaACCGcgGCg -3'
miRNA:   3'- uCGCGCGUCuaGU--------------UGGCG-UGGCaaUG- -5'
26649 5' -54.2 NC_005808.1 + 42360 0.66 0.68252
Target:  5'- aGGCGCGCucuuccguccAGggCGuGCCGUACCGggGg -3'
miRNA:   3'- -UCGCGCG----------UCuaGU-UGGCGUGGCaaUg -5'
26649 5' -54.2 NC_005808.1 + 24225 0.66 0.68252
Target:  5'- aAGCGCGCAGccGUCGaggcGCUGgGCCaGgcGCg -3'
miRNA:   3'- -UCGCGCGUC--UAGU----UGGCgUGG-CaaUG- -5'
26649 5' -54.2 NC_005808.1 + 31768 0.66 0.693763
Target:  5'- cGGCGgGCuGGUCAggcgguGCUGCAgCaGUUACu -3'
miRNA:   3'- -UCGCgCGuCUAGU------UGGCGUgG-CAAUG- -5'
26649 5' -54.2 NC_005808.1 + 39655 0.66 0.693763
Target:  5'- aGGCGCgGCGGGUCAuaGCUGC-UCGUc-- -3'
miRNA:   3'- -UCGCG-CGUCUAGU--UGGCGuGGCAaug -5'
26649 5' -54.2 NC_005808.1 + 38471 0.66 0.704941
Target:  5'- uGGCGgGCAuGUUGGCCGCGagcaCGUcGCg -3'
miRNA:   3'- -UCGCgCGUcUAGUUGGCGUg---GCAaUG- -5'
26649 5' -54.2 NC_005808.1 + 31054 0.66 0.704941
Target:  5'- cGCGCgugaGCAGAUCGuccACCGUcacGCCGa--- -3'
miRNA:   3'- uCGCG----CGUCUAGU---UGGCG---UGGCaaug -5'
26649 5' -54.2 NC_005808.1 + 13132 0.66 0.704941
Target:  5'- gAGCGCcaauucaacauGCAGA-CGGCCGCACUcaaGCa -3'
miRNA:   3'- -UCGCG-----------CGUCUaGUUGGCGUGGcaaUG- -5'
26649 5' -54.2 NC_005808.1 + 27191 0.7 0.440593
Target:  5'- uGCGCGCGGcGUCAGCUuugcaggcuaagGCACUGgUACu -3'
miRNA:   3'- uCGCGCGUC-UAGUUGG------------CGUGGCaAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.