miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 3' -55.3 NC_005808.1 + 41519 0.71 0.367992
Target:  5'- aGCgGcCGUUUGCGcucGCCGUCGAUGGUg -3'
miRNA:   3'- aCGaC-GCAAGCGUc--UGGUAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 41454 0.66 0.658993
Target:  5'- cGacgGCGagCGCAaacGGCCGcugcucaugaUCGACGGCa -3'
miRNA:   3'- aCga-CGCaaGCGU---CUGGU----------AGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 40740 0.71 0.342174
Target:  5'- -cCUGCGUuccagUCGCGGAUCGUCuGCGGg -3'
miRNA:   3'- acGACGCA-----AGCGUCUGGUAGcUGCCg -5'
26651 3' -55.3 NC_005808.1 + 40708 0.71 0.333864
Target:  5'- cGCUGCuGUUCGCccacccGGCCAgCGcCGGCc -3'
miRNA:   3'- aCGACG-CAAGCGu-----CUGGUaGCuGCCG- -5'
26651 3' -55.3 NC_005808.1 + 38399 0.67 0.603067
Target:  5'- cGCgacGUGcUCGCGGccaacaugcccGCCAUCGagGCGGCc -3'
miRNA:   3'- aCGa--CGCaAGCGUC-----------UGGUAGC--UGCCG- -5'
26651 3' -55.3 NC_005808.1 + 38142 0.67 0.558724
Target:  5'- cGCUugaGCGcaUCGCAGACCA-CGAaGGUc -3'
miRNA:   3'- aCGA---CGCa-AGCGUCUGGUaGCUgCCG- -5'
26651 3' -55.3 NC_005808.1 + 37191 0.66 0.62543
Target:  5'- gUGgaGCGUaCGCAGaagguGCUcgCGGCGcGCa -3'
miRNA:   3'- -ACgaCGCAaGCGUC-----UGGuaGCUGC-CG- -5'
26651 3' -55.3 NC_005808.1 + 36823 0.66 0.647816
Target:  5'- aGCaccgUGCGgUCGaaguGGCUAUUGugGGCg -3'
miRNA:   3'- aCG----ACGCaAGCgu--CUGGUAGCugCCG- -5'
26651 3' -55.3 NC_005808.1 + 36470 0.7 0.413902
Target:  5'- cGCaGCGUUUGCAGG----UGACGGCg -3'
miRNA:   3'- aCGaCGCAAGCGUCUgguaGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 36111 0.67 0.558724
Target:  5'- aGC-GCGUgaaUGCGGGCCugcgCGGCGuGCa -3'
miRNA:   3'- aCGaCGCAa--GCGUCUGGua--GCUGC-CG- -5'
26651 3' -55.3 NC_005808.1 + 35732 0.67 0.547769
Target:  5'- cGUUcUGUUCGaggccaAGACCGUCaACGGCg -3'
miRNA:   3'- aCGAcGCAAGCg-----UCUGGUAGcUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 34236 0.68 0.526073
Target:  5'- cGCggggGCG-UCGCGGAaCAUCGGC-GCg -3'
miRNA:   3'- aCGa---CGCaAGCGUCUgGUAGCUGcCG- -5'
26651 3' -55.3 NC_005808.1 + 34132 0.81 0.075534
Target:  5'- gGCUGCGgcaUCGCAGGCCAccUCGACGcCg -3'
miRNA:   3'- aCGACGCa--AGCGUCUGGU--AGCUGCcG- -5'
26651 3' -55.3 NC_005808.1 + 32681 0.68 0.488933
Target:  5'- cGCgGCGUcgcggcccuugaCGCGGGCCAgcuuggucacagcgUCGGCGGUg -3'
miRNA:   3'- aCGaCGCAa-----------GCGUCUGGU--------------AGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 32438 0.68 0.504708
Target:  5'- cUGCUggGCGgcCG-GGGCC-UCGGCGGCg -3'
miRNA:   3'- -ACGA--CGCaaGCgUCUGGuAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 30214 0.71 0.350633
Target:  5'- cGCUGaUGUccgaCGCGGugCAggcCGGCGGCg -3'
miRNA:   3'- aCGAC-GCAa---GCGUCugGUa--GCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 29057 0.68 0.536883
Target:  5'- gGCgGC--UCGUAGGCCAUCaGCGGg -3'
miRNA:   3'- aCGaCGcaAGCGUCUGGUAGcUGCCg -5'
26651 3' -55.3 NC_005808.1 + 28553 0.72 0.31769
Target:  5'- -cUUGCGgcCGCcGGCCAUCG-CGGCg -3'
miRNA:   3'- acGACGCaaGCGuCUGGUAGCuGCCG- -5'
26651 3' -55.3 NC_005808.1 + 28122 0.7 0.410101
Target:  5'- cGCUGUucgaGCAGACCGUCGccgacguguucuuCGGCg -3'
miRNA:   3'- aCGACGcaagCGUCUGGUAGCu------------GCCG- -5'
26651 3' -55.3 NC_005808.1 + 28088 0.66 0.670143
Target:  5'- gGCcGCGgcgUCGUAuuCCGUCG-CGGUg -3'
miRNA:   3'- aCGaCGCa--AGCGUcuGGUAGCuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.