miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 3' -55.3 NC_005808.1 + 1680 0.68 0.541229
Target:  5'- aUGCUGCcg-CGCAGguagucgagaaauucGCCGUgGGcCGGCg -3'
miRNA:   3'- -ACGACGcaaGCGUC---------------UGGUAgCU-GCCG- -5'
26651 3' -55.3 NC_005808.1 + 2518 0.67 0.547769
Target:  5'- gGCgggGCuucgGUUCGUAGACCAggaauUCG-CGGUa -3'
miRNA:   3'- aCGa--CG----CAAGCGUCUGGU-----AGCuGCCG- -5'
26651 3' -55.3 NC_005808.1 + 2731 0.68 0.504708
Target:  5'- cUGCucgaUGCGUacCGCaAGACC-UCGcACGGCa -3'
miRNA:   3'- -ACG----ACGCAa-GCG-UCUGGuAGC-UGCCG- -5'
26651 3' -55.3 NC_005808.1 + 3461 0.72 0.309826
Target:  5'- cGCcGCGcgccccgaugUUCGCGGGCgAguUCGACGGCc -3'
miRNA:   3'- aCGaCGC----------AAGCGUCUGgU--AGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 3561 0.71 0.359239
Target:  5'- cGCUGCGUacugguacaGCGGGCCGUCGAacucGCc -3'
miRNA:   3'- aCGACGCAag-------CGUCUGGUAGCUgc--CG- -5'
26651 3' -55.3 NC_005808.1 + 3946 0.66 0.62543
Target:  5'- gGCgGCGacggcagCGCGG-CCuacagCGACGGCg -3'
miRNA:   3'- aCGaCGCaa-----GCGUCuGGua---GCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 4175 0.69 0.433228
Target:  5'- cGCUGCag-CGCAGGCUggCGgaaacaccACGGCg -3'
miRNA:   3'- aCGACGcaaGCGUCUGGuaGC--------UGCCG- -5'
26651 3' -55.3 NC_005808.1 + 4690 0.67 0.547769
Target:  5'- -cCUGCGgcagCGCGGGCCAacaUUGGCcuGGCu -3'
miRNA:   3'- acGACGCaa--GCGUCUGGU---AGCUG--CCG- -5'
26651 3' -55.3 NC_005808.1 + 4811 0.71 0.37689
Target:  5'- cGCUGCGggaUUGCuGGCCggCGACaGGUc -3'
miRNA:   3'- aCGACGCa--AGCGuCUGGuaGCUG-CCG- -5'
26651 3' -55.3 NC_005808.1 + 5276 0.67 0.59192
Target:  5'- gUGUUGaUGUUCGCGGcGuuGUCGgccACGGCg -3'
miRNA:   3'- -ACGAC-GCAAGCGUC-UggUAGC---UGCCG- -5'
26651 3' -55.3 NC_005808.1 + 7180 0.66 0.647816
Target:  5'- cGCUGgGcaucaCGCAGuCCAUcgugcgCGugGGCg -3'
miRNA:   3'- aCGACgCaa---GCGUCuGGUA------GCugCCG- -5'
26651 3' -55.3 NC_005808.1 + 7295 0.69 0.463172
Target:  5'- cGUaGUGcUCGCGGauggcGCCGUCGAUGGUc -3'
miRNA:   3'- aCGaCGCaAGCGUC-----UGGUAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 7382 1.12 0.000418
Target:  5'- cUGCUGCGUUCGCAGACCAUCGACGGCg -3'
miRNA:   3'- -ACGACGCAAGCGUCUGGUAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 8187 0.66 0.641103
Target:  5'- aUGCUGCcggcgauuucaucgCGCAcGGCCucguagucgcgcugGUCGGCGGCc -3'
miRNA:   3'- -ACGACGcaa-----------GCGU-CUGG--------------UAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 8290 0.66 0.647816
Target:  5'- cUGCUGaCGgcCGCcGACCAgcgCGACuacgaGGCc -3'
miRNA:   3'- -ACGAC-GCaaGCGuCUGGUa--GCUG-----CCG- -5'
26651 3' -55.3 NC_005808.1 + 8559 0.66 0.655642
Target:  5'- cGCUcgaccucauccuggGCG-UCGUAGGCCGcgCGuGCGGCc -3'
miRNA:   3'- aCGA--------------CGCaAGCGUCUGGUa-GC-UGCCG- -5'
26651 3' -55.3 NC_005808.1 + 8633 0.69 0.483726
Target:  5'- cGCUGCGguggcgaggUCGCcGGCCuucAUCGcGCGGUc -3'
miRNA:   3'- aCGACGCa--------AGCGuCUGG---UAGC-UGCCG- -5'
26651 3' -55.3 NC_005808.1 + 8878 0.66 0.641103
Target:  5'- cGaaGCGggCGCGGGCauCAuugugaauggcgcuaUCGGCGGCg -3'
miRNA:   3'- aCgaCGCaaGCGUCUG--GU---------------AGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 9264 0.76 0.172905
Target:  5'- cGCcGCGccgccgaGCAGGCCAacgUCGACGGCg -3'
miRNA:   3'- aCGaCGCaag----CGUCUGGU---AGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 10489 0.67 0.603067
Target:  5'- aGCUGUuggaaaugaaaaGUg-GCgAGGCCAUCGGCGcGCu -3'
miRNA:   3'- aCGACG------------CAagCG-UCUGGUAGCUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.