miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 3' -55.3 NC_005808.1 + 11172 0.68 0.526073
Target:  5'- cGUUGCGUgCGCuggucGGCCGUggUGAUGGUg -3'
miRNA:   3'- aCGACGCAaGCGu----CUGGUA--GCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 11557 0.66 0.670143
Target:  5'- cUGCccuuUGCGgugUCGCAggcGACCAUCGAauacGCc -3'
miRNA:   3'- -ACG----ACGCa--AGCGU---CUGGUAGCUgc--CG- -5'
26651 3' -55.3 NC_005808.1 + 11662 0.66 0.670143
Target:  5'- cUGCUGCccg-GCGG-CCAgcCGGCGGCc -3'
miRNA:   3'- -ACGACGcaagCGUCuGGUa-GCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 11914 0.69 0.433228
Target:  5'- cGCgGgGUUCGCccAGGCCAaCcGCGGCg -3'
miRNA:   3'- aCGaCgCAAGCG--UCUGGUaGcUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 12279 0.66 0.670143
Target:  5'- gUGCUGCG-UC-CcGACCAggGGCaGGCa -3'
miRNA:   3'- -ACGACGCaAGcGuCUGGUagCUG-CCG- -5'
26651 3' -55.3 NC_005808.1 + 12671 0.69 0.483726
Target:  5'- cGCgucgGCGccaugCGCAaauUCAUCGACGGCu -3'
miRNA:   3'- aCGa---CGCaa---GCGUcu-GGUAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 14350 0.68 0.536883
Target:  5'- cUGCUG-GUUCGCGGuguCCuggaaggCGGgGGCa -3'
miRNA:   3'- -ACGACgCAAGCGUCu--GGua-----GCUgCCG- -5'
26651 3' -55.3 NC_005808.1 + 14825 0.74 0.2393
Target:  5'- cGCUGCcUUCGCccaGGucgauGCCGUUGGCGGCc -3'
miRNA:   3'- aCGACGcAAGCG---UC-----UGGUAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 15485 0.7 0.423499
Target:  5'- aGCUGUGgUUGCGcGugCAUCGGucgucCGGCa -3'
miRNA:   3'- aCGACGCaAGCGU-CugGUAGCU-----GCCG- -5'
26651 3' -55.3 NC_005808.1 + 15590 0.68 0.536883
Target:  5'- cGCUGCGgaUGCAccgcGCCAUCGGCcaGGa -3'
miRNA:   3'- aCGACGCaaGCGUc---UGGUAGCUG--CCg -5'
26651 3' -55.3 NC_005808.1 + 15838 0.71 0.342174
Target:  5'- aUGCcgucgUGCG-UCGC--ACCAUUGGCGGCa -3'
miRNA:   3'- -ACG-----ACGCaAGCGucUGGUAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 16202 0.67 0.603067
Target:  5'- aGCgUGCGgcCGCAGuccuacgucgggGCCAcCGACGuGCa -3'
miRNA:   3'- aCG-ACGCaaGCGUC------------UGGUaGCUGC-CG- -5'
26651 3' -55.3 NC_005808.1 + 18162 0.66 0.62543
Target:  5'- cGCgaagGCGUccugguUCGCGccGGCU-UCGGCGGCc -3'
miRNA:   3'- aCGa---CGCA------AGCGU--CUGGuAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 18280 0.68 0.526073
Target:  5'- uUGCcgGCcgUCaGCGGGCCGguggCGACGGUg -3'
miRNA:   3'- -ACGa-CGcaAG-CGUCUGGUa---GCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 20055 0.67 0.56974
Target:  5'- aGUUGgcgaGUUcuaCGCGGA-CAUCGGCGGCc -3'
miRNA:   3'- aCGACg---CAA---GCGUCUgGUAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 20762 0.74 0.226914
Target:  5'- cGCUGCGccgCGCucGACuCAUCGcGCGGCu -3'
miRNA:   3'- aCGACGCaa-GCGu-CUG-GUAGC-UGCCG- -5'
26651 3' -55.3 NC_005808.1 + 21220 0.68 0.493118
Target:  5'- cGCUGUugaaccaGggCGCGGACa--CGGCGGCc -3'
miRNA:   3'- aCGACG-------CaaGCGUCUGguaGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 21911 0.72 0.294547
Target:  5'- -aCUGCGcaaggCGCAGGCCAUCGACu-- -3'
miRNA:   3'- acGACGCaa---GCGUCUGGUAGCUGccg -5'
26651 3' -55.3 NC_005808.1 + 22413 0.71 0.359239
Target:  5'- cGCgUGaCGUUCGCcaGCCAcgccUUGACGGCg -3'
miRNA:   3'- aCG-AC-GCAAGCGucUGGU----AGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 22908 0.66 0.636625
Target:  5'- cGCaGCGcgCGCugucGGCUGUCGGCaGCg -3'
miRNA:   3'- aCGaCGCaaGCGu---CUGGUAGCUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.