Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26651 | 3' | -55.3 | NC_005808.1 | + | 7382 | 1.12 | 0.000418 |
Target: 5'- cUGCUGCGUUCGCAGACCAUCGACGGCg -3' miRNA: 3'- -ACGACGCAAGCGUCUGGUAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 2731 | 0.68 | 0.504708 |
Target: 5'- cUGCucgaUGCGUacCGCaAGACC-UCGcACGGCa -3' miRNA: 3'- -ACG----ACGCAa-GCG-UCUGGuAGC-UGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 34236 | 0.68 | 0.526073 |
Target: 5'- cGCggggGCG-UCGCGGAaCAUCGGC-GCg -3' miRNA: 3'- aCGa---CGCaAGCGUCUgGUAGCUGcCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 11557 | 0.66 | 0.670143 |
Target: 5'- cUGCccuuUGCGgugUCGCAggcGACCAUCGAauacGCc -3' miRNA: 3'- -ACG----ACGCa--AGCGU---CUGGUAGCUgc--CG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 40740 | 0.71 | 0.342174 |
Target: 5'- -cCUGCGUuccagUCGCGGAUCGUCuGCGGg -3' miRNA: 3'- acGACGCA-----AGCGUCUGGUAGcUGCCg -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 30214 | 0.71 | 0.350633 |
Target: 5'- cGCUGaUGUccgaCGCGGugCAggcCGGCGGCg -3' miRNA: 3'- aCGAC-GCAa---GCGUCugGUa--GCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 41519 | 0.71 | 0.367992 |
Target: 5'- aGCgGcCGUUUGCGcucGCCGUCGAUGGUg -3' miRNA: 3'- aCGaC-GCAAGCGUc--UGGUAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 28122 | 0.7 | 0.410101 |
Target: 5'- cGCUGUucgaGCAGACCGUCGccgacguguucuuCGGCg -3' miRNA: 3'- aCGACGcaagCGUCUGGUAGCu------------GCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 4175 | 0.69 | 0.433228 |
Target: 5'- cGCUGCag-CGCAGGCUggCGgaaacaccACGGCg -3' miRNA: 3'- aCGACGcaaGCGUCUGGuaGC--------UGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 21220 | 0.68 | 0.493118 |
Target: 5'- cGCUGUugaaccaGggCGCGGACa--CGGCGGCc -3' miRNA: 3'- aCGACG-------CaaGCGUCUGguaGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 23443 | 0.69 | 0.442094 |
Target: 5'- gUGCUGauuUUCaGCGGGCacgccaccguguuCAUCGGCGGCg -3' miRNA: 3'- -ACGACgc-AAG-CGUCUG-------------GUAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 15485 | 0.7 | 0.423499 |
Target: 5'- aGCUGUGgUUGCGcGugCAUCGGucgucCGGCa -3' miRNA: 3'- aCGACGCaAGCGU-CugGUAGCU-----GCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 9264 | 0.76 | 0.172905 |
Target: 5'- cGCcGCGccgccgaGCAGGCCAacgUCGACGGCg -3' miRNA: 3'- aCGaCGCaag----CGUCUGGU---AGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 12671 | 0.69 | 0.483726 |
Target: 5'- cGCgucgGCGccaugCGCAaauUCAUCGACGGCu -3' miRNA: 3'- aCGa---CGCaa---GCGUcu-GGUAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 21911 | 0.72 | 0.294547 |
Target: 5'- -aCUGCGcaaggCGCAGGCCAUCGACu-- -3' miRNA: 3'- acGACGCaa---GCGUCUGGUAGCUGccg -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 36470 | 0.7 | 0.413902 |
Target: 5'- cGCaGCGUUUGCAGG----UGACGGCg -3' miRNA: 3'- aCGaCGCAAGCGUCUgguaGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 32681 | 0.68 | 0.488933 |
Target: 5'- cGCgGCGUcgcggcccuugaCGCGGGCCAgcuuggucacagcgUCGGCGGUg -3' miRNA: 3'- aCGaCGCAa-----------GCGUCUGGU--------------AGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 32438 | 0.68 | 0.504708 |
Target: 5'- cUGCUggGCGgcCG-GGGCC-UCGGCGGCg -3' miRNA: 3'- -ACGA--CGCaaGCgUCUGGuAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 15838 | 0.71 | 0.342174 |
Target: 5'- aUGCcgucgUGCG-UCGC--ACCAUUGGCGGCa -3' miRNA: 3'- -ACG-----ACGCaAGCGucUGGUAGCUGCCG- -5' |
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26651 | 3' | -55.3 | NC_005808.1 | + | 3561 | 0.71 | 0.359239 |
Target: 5'- cGCUGCGUacugguacaGCGGGCCGUCGAacucGCc -3' miRNA: 3'- aCGACGCAag-------CGUCUGGUAGCUgc--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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