miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 5' -59.3 NC_005808.1 + 20298 0.67 0.38585
Target:  5'- gGAGCAa---GGCaCCCaAGGCCAacAGCc -3'
miRNA:   3'- gCUCGUgaugCCG-GGGcUCCGGU--UCG- -5'
26651 5' -59.3 NC_005808.1 + 31603 0.67 0.38585
Target:  5'- cCGAgGCGCUguuuccACGGCaacacagCGAGGCCcAGCa -3'
miRNA:   3'- -GCU-CGUGA------UGCCGgg-----GCUCCGGuUCG- -5'
26651 5' -59.3 NC_005808.1 + 7276 0.67 0.377039
Target:  5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3'
miRNA:   3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5'
26651 5' -59.3 NC_005808.1 + 29612 0.67 0.371818
Target:  5'- cCGAGCACggcguggguguccucUGCGGCCagGGGGCacAGCc -3'
miRNA:   3'- -GCUCGUG---------------AUGCCGGggCUCCGguUCG- -5'
26651 5' -59.3 NC_005808.1 + 30060 0.67 0.368365
Target:  5'- gGAGCACgAUGGCCCguuCGAcGGCugcaucCAGGCc -3'
miRNA:   3'- gCUCGUGaUGCCGGG---GCU-CCG------GUUCG- -5'
26651 5' -59.3 NC_005808.1 + 21316 0.67 0.359829
Target:  5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3'
miRNA:   3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5'
26651 5' -59.3 NC_005808.1 + 20215 0.67 0.359829
Target:  5'- cCGAGCAaUACgaauuccaGGcCCCCGAaGGCguGGCa -3'
miRNA:   3'- -GCUCGUgAUG--------CC-GGGGCU-CCGguUCG- -5'
26651 5' -59.3 NC_005808.1 + 37294 0.67 0.358983
Target:  5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3'
miRNA:   3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5'
26651 5' -59.3 NC_005808.1 + 1462 0.67 0.351431
Target:  5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3'
miRNA:   3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 8473 0.68 0.343174
Target:  5'- -aAGCGC-ACGGCCCUGGccgacuGGCUAcGCa -3'
miRNA:   3'- gcUCGUGaUGCCGGGGCU------CCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 15793 0.68 0.343174
Target:  5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5'
26651 5' -59.3 NC_005808.1 + 35278 0.68 0.342356
Target:  5'- gCGGGCACcGCGGCgaccuuccaccagCuuGAaGCCGGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCG-------------GggCUcCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 31239 0.68 0.335058
Target:  5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3'
miRNA:   3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 18626 0.68 0.334254
Target:  5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3'
miRNA:   3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 9793 0.68 0.333451
Target:  5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3'
miRNA:   3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5'
26651 5' -59.3 NC_005808.1 + 29076 0.68 0.327082
Target:  5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3'
miRNA:   3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 42213 0.68 0.327082
Target:  5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3'
miRNA:   3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 1314 0.68 0.319248
Target:  5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3'
miRNA:   3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5'
26651 5' -59.3 NC_005808.1 + 3846 0.68 0.319248
Target:  5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3'
miRNA:   3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5'
26651 5' -59.3 NC_005808.1 + 29829 0.68 0.319248
Target:  5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3'
miRNA:   3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.