Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26651 | 5' | -59.3 | NC_005808.1 | + | 8049 | 0.7 | 0.255732 |
Target: 5'- aCGAGCGCggcgacauggaaaccACGaugcGCgCCGAGGCCAcgGGCa -3' miRNA: 3'- -GCUCGUGa--------------UGC----CGgGGCUCCGGU--UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 23800 | 0.69 | 0.268365 |
Target: 5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3' miRNA: 3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 32356 | 0.69 | 0.268365 |
Target: 5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3' miRNA: 3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 34237 | 0.69 | 0.282201 |
Target: 5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 34395 | 0.69 | 0.282201 |
Target: 5'- cCGGGCAUU-CGGCuUCCaGGGCCAcGCu -3' miRNA: 3'- -GCUCGUGAuGCCG-GGGcUCCGGUuCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 12815 | 0.69 | 0.282907 |
Target: 5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3' miRNA: 3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 1067 | 0.68 | 0.311556 |
Target: 5'- uCGA-CGCUGCGGUgaaCCaCGGcaccGGCCAGGCg -3' miRNA: 3'- -GCUcGUGAUGCCG---GG-GCU----CCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 3846 | 0.68 | 0.319248 |
Target: 5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3' miRNA: 3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 1314 | 0.68 | 0.319248 |
Target: 5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3' miRNA: 3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 29829 | 0.68 | 0.319248 |
Target: 5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3' miRNA: 3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 42213 | 0.68 | 0.327082 |
Target: 5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3' miRNA: 3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 29076 | 0.68 | 0.327082 |
Target: 5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3' miRNA: 3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 9793 | 0.68 | 0.333451 |
Target: 5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3' miRNA: 3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 18626 | 0.68 | 0.334254 |
Target: 5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3' miRNA: 3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 31239 | 0.68 | 0.335058 |
Target: 5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3' miRNA: 3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 35278 | 0.68 | 0.342356 |
Target: 5'- gCGGGCACcGCGGCgaccuuccaccagCuuGAaGCCGGGCa -3' miRNA: 3'- -GCUCGUGaUGCCG-------------GggCUcCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 15793 | 0.68 | 0.343174 |
Target: 5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3' miRNA: 3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 8473 | 0.68 | 0.343174 |
Target: 5'- -aAGCGC-ACGGCCCUGGccgacuGGCUAcGCa -3' miRNA: 3'- gcUCGUGaUGCCGGGGCU------CCGGUuCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 1462 | 0.67 | 0.351431 |
Target: 5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3' miRNA: 3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 37294 | 0.67 | 0.358983 |
Target: 5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3' miRNA: 3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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