miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 5' -59.3 NC_005808.1 + 7348 1.12 0.000183
Target:  5'- gCGAGCACUACGGCCCCGAGGCCAAGCa -3'
miRNA:   3'- -GCUCGUGAUGCCGGGGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 40704 0.8 0.045758
Target:  5'- uCGAGCGC-GCGGCCCUGGGGgaAGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCUCCggUUCG- -5'
26651 5' -59.3 NC_005808.1 + 27499 0.79 0.056013
Target:  5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3'
miRNA:   3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 30093 0.78 0.070268
Target:  5'- cCGGGCGCcACGGCCCUugucccaggcgauGAGGCCGcGCc -3'
miRNA:   3'- -GCUCGUGaUGCCGGGG-------------CUCCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 34904 0.76 0.099051
Target:  5'- -cGGCAagcCGGCCgCCGAGGUCAAGCc -3'
miRNA:   3'- gcUCGUgauGCCGG-GGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 32935 0.75 0.110808
Target:  5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3'
miRNA:   3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 8422 0.74 0.120471
Target:  5'- cCGuGCGCUugucuACGGCCuuGAGGCUuuGGCc -3'
miRNA:   3'- -GCuCGUGA-----UGCCGGggCUCCGGu-UCG- -5'
26651 5' -59.3 NC_005808.1 + 14994 0.74 0.138332
Target:  5'- uGGGCGCgcaguCGGCaCuuGAGGCCGgccAGCa -3'
miRNA:   3'- gCUCGUGau---GCCG-GggCUCCGGU---UCG- -5'
26651 5' -59.3 NC_005808.1 + 17436 0.73 0.146135
Target:  5'- uGAGCAg--UGGCCCCgccagcaucGAGGCCAGGUg -3'
miRNA:   3'- gCUCGUgauGCCGGGG---------CUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 9526 0.73 0.150186
Target:  5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3'
miRNA:   3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5'
26651 5' -59.3 NC_005808.1 + 11667 0.72 0.172004
Target:  5'- -uGGCACUGCuGCCCgGcGGCCAgccGGCg -3'
miRNA:   3'- gcUCGUGAUGcCGGGgCuCCGGU---UCG- -5'
26651 5' -59.3 NC_005808.1 + 11268 0.72 0.17622
Target:  5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3'
miRNA:   3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 36244 0.71 0.196608
Target:  5'- -cAGCGCccCGGCCUUcGGGCCGGGCg -3'
miRNA:   3'- gcUCGUGauGCCGGGGcUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 35526 0.71 0.212248
Target:  5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3'
miRNA:   3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 18766 0.7 0.224231
Target:  5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3'
miRNA:   3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5'
26651 5' -59.3 NC_005808.1 + 35542 0.7 0.230137
Target:  5'- aCGA-CGCUGCcG-CCCGAGGCCAuGCg -3'
miRNA:   3'- -GCUcGUGAUGcCgGGGCUCCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 23298 0.7 0.230137
Target:  5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3'
miRNA:   3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 32155 0.7 0.236173
Target:  5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3'
miRNA:   3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5'
26651 5' -59.3 NC_005808.1 + 8639 0.7 0.248008
Target:  5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3'
miRNA:   3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 11216 0.7 0.255081
Target:  5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3'
miRNA:   3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.