miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 5' -59.3 NC_005808.1 + 34904 0.76 0.099051
Target:  5'- -cGGCAagcCGGCCgCCGAGGUCAAGCc -3'
miRNA:   3'- gcUCGUgauGCCGG-GGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 35441 0.66 0.421482
Target:  5'- -aAGCGCc-CGGCCCUGgucauccAGGCCGcAGCc -3'
miRNA:   3'- gcUCGUGauGCCGGGGC-------UCCGGU-UCG- -5'
26651 5' -59.3 NC_005808.1 + 4883 0.67 0.394796
Target:  5'- -cAGCGCggcgacgGCGGCCUCGuuuucGGCCAcGGUg -3'
miRNA:   3'- gcUCGUGa------UGCCGGGGCu----CCGGU-UCG- -5'
26651 5' -59.3 NC_005808.1 + 7276 0.67 0.377039
Target:  5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3'
miRNA:   3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5'
26651 5' -59.3 NC_005808.1 + 21316 0.67 0.359829
Target:  5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3'
miRNA:   3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5'
26651 5' -59.3 NC_005808.1 + 37294 0.67 0.358983
Target:  5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3'
miRNA:   3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5'
26651 5' -59.3 NC_005808.1 + 1462 0.67 0.351431
Target:  5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3'
miRNA:   3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 31239 0.68 0.335058
Target:  5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3'
miRNA:   3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 42213 0.68 0.327082
Target:  5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3'
miRNA:   3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 29076 0.68 0.327082
Target:  5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3'
miRNA:   3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 1314 0.68 0.319248
Target:  5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3'
miRNA:   3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5'
26651 5' -59.3 NC_005808.1 + 34237 0.69 0.282201
Target:  5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5'
26651 5' -59.3 NC_005808.1 + 32356 0.69 0.268365
Target:  5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3'
miRNA:   3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5'
26651 5' -59.3 NC_005808.1 + 35542 0.7 0.230137
Target:  5'- aCGA-CGCUGCcG-CCCGAGGCCAuGCg -3'
miRNA:   3'- -GCUcGUGAUGcCgGGGCUCCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 36244 0.71 0.196608
Target:  5'- -cAGCGCccCGGCCUUcGGGCCGGGCg -3'
miRNA:   3'- gcUCGUGauGCCGGGGcUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 11268 0.72 0.17622
Target:  5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3'
miRNA:   3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 9526 0.73 0.150186
Target:  5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3'
miRNA:   3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5'
26651 5' -59.3 NC_005808.1 + 17436 0.73 0.146135
Target:  5'- uGAGCAg--UGGCCCCgccagcaucGAGGCCAGGUg -3'
miRNA:   3'- gCUCGUgauGCCGGGG---------CUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 8422 0.74 0.120471
Target:  5'- cCGuGCGCUugucuACGGCCuuGAGGCUuuGGCc -3'
miRNA:   3'- -GCuCGUGA-----UGCCGGggCUCCGGu-UCG- -5'
26651 5' -59.3 NC_005808.1 + 30093 0.78 0.070268
Target:  5'- cCGGGCGCcACGGCCCUugucccaggcgauGAGGCCGcGCc -3'
miRNA:   3'- -GCUCGUGaUGCCGGGG-------------CUCCGGUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.