miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 5' -59.3 NC_005808.1 + 12815 0.69 0.282907
Target:  5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3'
miRNA:   3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 7348 1.12 0.000183
Target:  5'- gCGAGCACUACGGCCCCGAGGCCAAGCa -3'
miRNA:   3'- -GCUCGUGAUGCCGGGGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 40704 0.8 0.045758
Target:  5'- uCGAGCGC-GCGGCCCUGGGGgaAGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCUCCggUUCG- -5'
26651 5' -59.3 NC_005808.1 + 32155 0.7 0.236173
Target:  5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3'
miRNA:   3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5'
26651 5' -59.3 NC_005808.1 + 8639 0.7 0.248008
Target:  5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3'
miRNA:   3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 27499 0.79 0.056013
Target:  5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3'
miRNA:   3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 35526 0.71 0.212248
Target:  5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3'
miRNA:   3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 23298 0.7 0.230137
Target:  5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3'
miRNA:   3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 34395 0.69 0.282201
Target:  5'- cCGGGCAUU-CGGCuUCCaGGGCCAcGCu -3'
miRNA:   3'- -GCUCGUGAuGCCG-GGGcUCCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 29829 0.68 0.319248
Target:  5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3'
miRNA:   3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 15440 0.66 0.441472
Target:  5'- --cGCACgcggACGcGCUcaCCGAGGUgAAGCa -3'
miRNA:   3'- gcuCGUGa---UGC-CGG--GGCUCCGgUUCG- -5'
26651 5' -59.3 NC_005808.1 + 14994 0.74 0.138332
Target:  5'- uGGGCGCgcaguCGGCaCuuGAGGCCGgccAGCa -3'
miRNA:   3'- gCUCGUGau---GCCG-GggCUCCGGU---UCG- -5'
26651 5' -59.3 NC_005808.1 + 32935 0.75 0.110808
Target:  5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3'
miRNA:   3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 8049 0.7 0.255732
Target:  5'- aCGAGCGCggcgacauggaaaccACGaugcGCgCCGAGGCCAcgGGCa -3'
miRNA:   3'- -GCUCGUGa--------------UGC----CGgGGCUCCGGU--UCG- -5'
26651 5' -59.3 NC_005808.1 + 23800 0.69 0.268365
Target:  5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3'
miRNA:   3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5'
26651 5' -59.3 NC_005808.1 + 11667 0.72 0.172004
Target:  5'- -uGGCACUGCuGCCCgGcGGCCAgccGGCg -3'
miRNA:   3'- gcUCGUGAUGcCGGGgCuCCGGU---UCG- -5'
26651 5' -59.3 NC_005808.1 + 3846 0.68 0.319248
Target:  5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3'
miRNA:   3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5'
26651 5' -59.3 NC_005808.1 + 9793 0.68 0.333451
Target:  5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3'
miRNA:   3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5'
26651 5' -59.3 NC_005808.1 + 18766 0.7 0.224231
Target:  5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3'
miRNA:   3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5'
26651 5' -59.3 NC_005808.1 + 11216 0.7 0.255081
Target:  5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3'
miRNA:   3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.