miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 5' -59.3 NC_005808.1 + 16574 0.66 0.441472
Target:  5'- uGuAGCGCgACGcGCCggaCGAGGCCGAccacGCg -3'
miRNA:   3'- gC-UCGUGaUGC-CGGg--GCUCCGGUU----CG- -5'
26651 5' -59.3 NC_005808.1 + 10969 0.66 0.431886
Target:  5'- gGGGaCACUG-GGCCaCCuGuucGGCCAGGCc -3'
miRNA:   3'- gCUC-GUGAUgCCGG-GG-Cu--CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 35441 0.66 0.421482
Target:  5'- -aAGCGCc-CGGCCCUGgucauccAGGCCGcAGCc -3'
miRNA:   3'- gcUCGUGauGCCGGGGC-------UCCGGU-UCG- -5'
26651 5' -59.3 NC_005808.1 + 12626 0.66 0.438584
Target:  5'- gCGcAGCGCgaggcCGGCaagaaauucaccgaCgCCGAGGUCGAGCa -3'
miRNA:   3'- -GC-UCGUGau---GCCG--------------G-GGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 1385 0.66 0.431886
Target:  5'- --cGCGCUuguCGGCCUgGuGGCCGucgcccugGGCg -3'
miRNA:   3'- gcuCGUGAu--GCCGGGgCuCCGGU--------UCG- -5'
26651 5' -59.3 NC_005808.1 + 9157 0.66 0.431886
Target:  5'- -cGGCAagaACGGCCUCGcGGCCA-GUg -3'
miRNA:   3'- gcUCGUga-UGCCGGGGCuCCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 10639 0.66 0.431886
Target:  5'- uGGGUACUACG--CCCGAGGCgCuguuccAGCa -3'
miRNA:   3'- gCUCGUGAUGCcgGGGCUCCG-Gu-----UCG- -5'
26651 5' -59.3 NC_005808.1 + 28411 0.66 0.413084
Target:  5'- --cGCGC-GCuGCCCgaCGAGGCCAAGg -3'
miRNA:   3'- gcuCGUGaUGcCGGG--GCUCCGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 21313 0.66 0.431886
Target:  5'- uGGGCAU--CGaCCCCGAGuugaucguGCCGGGCa -3'
miRNA:   3'- gCUCGUGauGCcGGGGCUC--------CGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 15440 0.66 0.441472
Target:  5'- --cGCACgcggACGcGCUcaCCGAGGUgAAGCa -3'
miRNA:   3'- gcuCGUGa---UGC-CGG--GGCUCCGgUUCG- -5'
26651 5' -59.3 NC_005808.1 + 26535 0.66 0.441472
Target:  5'- cCGAauGCcaaACUgACGGaUgCCGAGGUCGAGCg -3'
miRNA:   3'- -GCU--CG---UGA-UGCC-GgGGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 1549 0.66 0.422422
Target:  5'- -cAGCACUGCGauaCCCCGGccuGCCAGGa -3'
miRNA:   3'- gcUCGUGAUGCc--GGGGCUc--CGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 37028 0.66 0.451178
Target:  5'- gGAGUAUgcCGGCCUCGAcaucgaaGCCAuGCg -3'
miRNA:   3'- gCUCGUGauGCCGGGGCUc------CGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 11325 0.66 0.451178
Target:  5'- uCGGGCAgaACGGCCCauucguucAGGUCuuGCa -3'
miRNA:   3'- -GCUCGUgaUGCCGGGgc------UCCGGuuCG- -5'
26651 5' -59.3 NC_005808.1 + 33953 0.66 0.441472
Target:  5'- gCGAGUACggcGCGGCCuggggcguuuCCGAagggcguaccGGCCAcGCc -3'
miRNA:   3'- -GCUCGUGa--UGCCGG----------GGCU----------CCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 33187 0.66 0.441472
Target:  5'- uGGGCGCccucggcACGGCCaCCGcuGGCUAucgcGGCa -3'
miRNA:   3'- gCUCGUGa------UGCCGG-GGCu-CCGGU----UCG- -5'
26651 5' -59.3 NC_005808.1 + 15584 0.66 0.441472
Target:  5'- aCGAcGCGCUGCGGaugcaCCgCGccaucGGCCAGGa -3'
miRNA:   3'- -GCU-CGUGAUGCCg----GG-GCu----CCGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 31964 0.67 0.38585
Target:  5'- -aGGCACU-CGGCCUCGAuGGCgGAa- -3'
miRNA:   3'- gcUCGUGAuGCCGGGGCU-CCGgUUcg -5'
26651 5' -59.3 NC_005808.1 + 31603 0.67 0.38585
Target:  5'- cCGAgGCGCUguuuccACGGCaacacagCGAGGCCcAGCa -3'
miRNA:   3'- -GCU-CGUGA------UGCCGgg-----GCUCCGGuUCG- -5'
26651 5' -59.3 NC_005808.1 + 14769 0.67 0.394796
Target:  5'- aGGGCAUggaGGCgcaaCUGcAGGCCGGGCu -3'
miRNA:   3'- gCUCGUGaugCCGg---GGC-UCCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.