miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 5' -59.3 NC_005808.1 + 1067 0.68 0.311556
Target:  5'- uCGA-CGCUGCGGUgaaCCaCGGcaccGGCCAGGCg -3'
miRNA:   3'- -GCUcGUGAUGCCG---GG-GCU----CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 1314 0.68 0.319248
Target:  5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3'
miRNA:   3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5'
26651 5' -59.3 NC_005808.1 + 1385 0.66 0.431886
Target:  5'- --cGCGCUuguCGGCCUgGuGGCCGucgcccugGGCg -3'
miRNA:   3'- gcuCGUGAu--GCCGGGgCuCCGGU--------UCG- -5'
26651 5' -59.3 NC_005808.1 + 1462 0.67 0.351431
Target:  5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3'
miRNA:   3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 1549 0.66 0.422422
Target:  5'- -cAGCACUGCGauaCCCCGGccuGCCAGGa -3'
miRNA:   3'- gcUCGUGAUGCc--GGGGCUc--CGGUUCg -5'
26651 5' -59.3 NC_005808.1 + 3846 0.68 0.319248
Target:  5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3'
miRNA:   3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5'
26651 5' -59.3 NC_005808.1 + 4883 0.67 0.394796
Target:  5'- -cAGCGCggcgacgGCGGCCUCGuuuucGGCCAcGGUg -3'
miRNA:   3'- gcUCGUGa------UGCCGGGGCu----CCGGU-UCG- -5'
26651 5' -59.3 NC_005808.1 + 7276 0.67 0.377039
Target:  5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3'
miRNA:   3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5'
26651 5' -59.3 NC_005808.1 + 7348 1.12 0.000183
Target:  5'- gCGAGCACUACGGCCCCGAGGCCAAGCa -3'
miRNA:   3'- -GCUCGUGAUGCCGGGGCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 8049 0.7 0.255732
Target:  5'- aCGAGCGCggcgacauggaaaccACGaugcGCgCCGAGGCCAcgGGCa -3'
miRNA:   3'- -GCUCGUGa--------------UGC----CGgGGCUCCGGU--UCG- -5'
26651 5' -59.3 NC_005808.1 + 8422 0.74 0.120471
Target:  5'- cCGuGCGCUugucuACGGCCuuGAGGCUuuGGCc -3'
miRNA:   3'- -GCuCGUGA-----UGCCGGggCUCCGGu-UCG- -5'
26651 5' -59.3 NC_005808.1 + 8473 0.68 0.343174
Target:  5'- -aAGCGC-ACGGCCCUGGccgacuGGCUAcGCa -3'
miRNA:   3'- gcUCGUGaUGCCGGGGCU------CCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 8639 0.7 0.248008
Target:  5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3'
miRNA:   3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 9157 0.66 0.431886
Target:  5'- -cGGCAagaACGGCCUCGcGGCCA-GUg -3'
miRNA:   3'- gcUCGUga-UGCCGGGGCuCCGGUuCG- -5'
26651 5' -59.3 NC_005808.1 + 9526 0.73 0.150186
Target:  5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3'
miRNA:   3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5'
26651 5' -59.3 NC_005808.1 + 9793 0.68 0.333451
Target:  5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3'
miRNA:   3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5'
26651 5' -59.3 NC_005808.1 + 10639 0.66 0.431886
Target:  5'- uGGGUACUACG--CCCGAGGCgCuguuccAGCa -3'
miRNA:   3'- gCUCGUGAUGCcgGGGCUCCG-Gu-----UCG- -5'
26651 5' -59.3 NC_005808.1 + 10969 0.66 0.431886
Target:  5'- gGGGaCACUG-GGCCaCCuGuucGGCCAGGCc -3'
miRNA:   3'- gCUC-GUGAUgCCGG-GG-Cu--CCGGUUCG- -5'
26651 5' -59.3 NC_005808.1 + 11216 0.7 0.255081
Target:  5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3'
miRNA:   3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5'
26651 5' -59.3 NC_005808.1 + 11268 0.72 0.17622
Target:  5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3'
miRNA:   3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.