Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26651 | 5' | -59.3 | NC_005808.1 | + | 42213 | 0.68 | 0.327082 |
Target: 5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3' miRNA: 3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 40704 | 0.8 | 0.045758 |
Target: 5'- uCGAGCGC-GCGGCCCUGGGGgaAGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGGGGCUCCggUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 37294 | 0.67 | 0.358983 |
Target: 5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3' miRNA: 3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 37028 | 0.66 | 0.451178 |
Target: 5'- gGAGUAUgcCGGCCUCGAcaucgaaGCCAuGCg -3' miRNA: 3'- gCUCGUGauGCCGGGGCUc------CGGUuCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 36244 | 0.71 | 0.196608 |
Target: 5'- -cAGCGCccCGGCCUUcGGGCCGGGCg -3' miRNA: 3'- gcUCGUGauGCCGGGGcUCCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 35542 | 0.7 | 0.230137 |
Target: 5'- aCGA-CGCUGCcG-CCCGAGGCCAuGCg -3' miRNA: 3'- -GCUcGUGAUGcCgGGGCUCCGGUuCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 35526 | 0.71 | 0.212248 |
Target: 5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3' miRNA: 3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 35441 | 0.66 | 0.421482 |
Target: 5'- -aAGCGCc-CGGCCCUGgucauccAGGCCGcAGCc -3' miRNA: 3'- gcUCGUGauGCCGGGGC-------UCCGGU-UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 35278 | 0.68 | 0.342356 |
Target: 5'- gCGGGCACcGCGGCgaccuuccaccagCuuGAaGCCGGGCa -3' miRNA: 3'- -GCUCGUGaUGCCG-------------GggCUcCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 34904 | 0.76 | 0.099051 |
Target: 5'- -cGGCAagcCGGCCgCCGAGGUCAAGCc -3' miRNA: 3'- gcUCGUgauGCCGG-GGCUCCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 34395 | 0.69 | 0.282201 |
Target: 5'- cCGGGCAUU-CGGCuUCCaGGGCCAcGCu -3' miRNA: 3'- -GCUCGUGAuGCCG-GGGcUCCGGUuCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 34237 | 0.69 | 0.282201 |
Target: 5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 33953 | 0.66 | 0.441472 |
Target: 5'- gCGAGUACggcGCGGCCuggggcguuuCCGAagggcguaccGGCCAcGCc -3' miRNA: 3'- -GCUCGUGa--UGCCGG----------GGCU----------CCGGUuCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 33187 | 0.66 | 0.441472 |
Target: 5'- uGGGCGCccucggcACGGCCaCCGcuGGCUAucgcGGCa -3' miRNA: 3'- gCUCGUGa------UGCCGG-GGCu-CCGGU----UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 32935 | 0.75 | 0.110808 |
Target: 5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3' miRNA: 3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 32356 | 0.69 | 0.268365 |
Target: 5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3' miRNA: 3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 32155 | 0.7 | 0.236173 |
Target: 5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3' miRNA: 3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 31964 | 0.67 | 0.38585 |
Target: 5'- -aGGCACU-CGGCCUCGAuGGCgGAa- -3' miRNA: 3'- gcUCGUGAuGCCGGGGCU-CCGgUUcg -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 31603 | 0.67 | 0.38585 |
Target: 5'- cCGAgGCGCUguuuccACGGCaacacagCGAGGCCcAGCa -3' miRNA: 3'- -GCU-CGUGA------UGCCGgg-----GCUCCGGuUCG- -5' |
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26651 | 5' | -59.3 | NC_005808.1 | + | 31239 | 0.68 | 0.335058 |
Target: 5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3' miRNA: 3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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