Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26652 | 5' | -57.7 | NC_005808.1 | + | 27494 | 0.69 | 0.304953 |
Target: 5'- cGAGGaUGCcGGCgGCcu-CGGCCGCCa -3' miRNA: 3'- aCUUC-GCGuUCGaCGacuGCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 39927 | 0.69 | 0.304953 |
Target: 5'- -uGAGCGCGGcccggcGCUGCUcgGGCGuGCCGaCCa -3' miRNA: 3'- acUUCGCGUU------CGACGA--CUGC-CGGC-GG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 34883 | 0.69 | 0.301902 |
Target: 5'- -cGAGCGUgcGCUGCaGuucaucggcaagcCGGCCGCCg -3' miRNA: 3'- acUUCGCGuuCGACGaCu------------GCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 1028 | 0.7 | 0.29737 |
Target: 5'- aGuGGCuGCAAGCUGCcGugGGCacCGCg -3' miRNA: 3'- aCuUCG-CGUUCGACGaCugCCG--GCGg -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 6691 | 0.7 | 0.289934 |
Target: 5'- -cAAGCGCGcGaaGCUGGCGGCggacuaCGCCa -3' miRNA: 3'- acUUCGCGUuCgaCGACUGCCG------GCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 20691 | 0.7 | 0.289934 |
Target: 5'- -cGAGCGCAGGCcgacaccgaccUGC-GACG-CCGCCu -3' miRNA: 3'- acUUCGCGUUCG-----------ACGaCUGCcGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 26336 | 0.7 | 0.289934 |
Target: 5'- cGAuGCGCGAGCcgaccagGCcGGCGGgUGCCc -3' miRNA: 3'- aCUuCGCGUUCGa------CGaCUGCCgGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 19026 | 0.7 | 0.289934 |
Target: 5'- gUGGGuGCGguAGCc-CUGguaGCGGCCGCCg -3' miRNA: 3'- -ACUU-CGCguUCGacGAC---UGCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 25758 | 0.7 | 0.282645 |
Target: 5'- -uGGGCGC--GCUGCUgGGCGGCgGCa -3' miRNA: 3'- acUUCGCGuuCGACGA-CUGCCGgCGg -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 15639 | 0.7 | 0.282645 |
Target: 5'- cGAGGUGCuccAGGCcGCUGAuauggcuuacCGGCuCGCCc -3' miRNA: 3'- aCUUCGCG---UUCGaCGACU----------GCCG-GCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 37329 | 0.7 | 0.275502 |
Target: 5'- cGuGGCGCAGcauggcaucgcGCUGCg--UGGCCGCCu -3' miRNA: 3'- aCuUCGCGUU-----------CGACGacuGCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 3677 | 0.7 | 0.268503 |
Target: 5'- gUGAauGGCGCAuccgaauacacGGCcaacaCUGGCGGCCGCg -3' miRNA: 3'- -ACU--UCGCGU-----------UCGac---GACUGCCGGCGg -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 4271 | 0.7 | 0.268503 |
Target: 5'- --cAGCGCcGGCaUGgUGAUGGCCGUg -3' miRNA: 3'- acuUCGCGuUCG-ACgACUGCCGGCGg -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 17009 | 0.71 | 0.254938 |
Target: 5'- --cGGCgGCAcGCUGCUgGACGG-CGCCg -3' miRNA: 3'- acuUCG-CGUuCGACGA-CUGCCgGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 28891 | 0.71 | 0.248369 |
Target: 5'- --uGGCGU-AGUUGCUGGCcGUCGCCg -3' miRNA: 3'- acuUCGCGuUCGACGACUGcCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 27775 | 0.71 | 0.248369 |
Target: 5'- aUGAccGGCgGCGAGCcGCUGcCGGCgCGCg -3' miRNA: 3'- -ACU--UCG-CGUUCGaCGACuGCCG-GCGg -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 19529 | 0.71 | 0.248369 |
Target: 5'- --uGGCGCAAGCUGaacuaUGGCGuGCaGCCc -3' miRNA: 3'- acuUCGCGUUCGACg----ACUGC-CGgCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 18065 | 0.71 | 0.235651 |
Target: 5'- --cGGCGCGGGgUGCgUGcugGGCCGCCg -3' miRNA: 3'- acuUCGCGUUCgACG-ACug-CCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 27575 | 0.71 | 0.229499 |
Target: 5'- ---cGCGcCGAGaaGCUGGCGGCCgagGCCg -3' miRNA: 3'- acuuCGC-GUUCgaCGACUGCCGG---CGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 18765 | 0.72 | 0.211855 |
Target: 5'- cGAuGCGCu-GCUGCUGACcgaGGcCCGCg -3' miRNA: 3'- aCUuCGCGuuCGACGACUG---CC-GGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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