Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26652 | 5' | -57.7 | NC_005808.1 | + | 8302 | 1.12 | 0.000205 |
Target: 5'- uUGAAGCGCAAGCUGCUGACGGCCGCCg -3' miRNA: 3'- -ACUUCGCGUUCGACGACUGCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 37444 | 0.8 | 0.051028 |
Target: 5'- -aGGGCGUGAGCaGC-GACGGCCGCCu -3' miRNA: 3'- acUUCGCGUUCGaCGaCUGCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 3557 | 0.78 | 0.077811 |
Target: 5'- cGAacAGCGCAgcAGCggGCUGggcguacaccgauccGCGGCCGCCa -3' miRNA: 3'- aCU--UCGCGU--UCGa-CGAC---------------UGCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 25695 | 0.76 | 0.108722 |
Target: 5'- cGAGGUGgAcgcGCUGCUGGCGaccgcGCCGCCg -3' miRNA: 3'- aCUUCGCgUu--CGACGACUGC-----CGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 40281 | 0.74 | 0.14029 |
Target: 5'- cGAGGCGCAcGGCa--UGGCGGUCGCUg -3' miRNA: 3'- aCUUCGCGU-UCGacgACUGCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 34688 | 0.73 | 0.170434 |
Target: 5'- -cGAGCGCAacgAGCaGCUGGCGaucuacgcacgcGCCGCCc -3' miRNA: 3'- acUUCGCGU---UCGaCGACUGC------------CGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 28744 | 0.73 | 0.170434 |
Target: 5'- cGAcguGGCGCGccGC-GCUGGCgaGGCCGCCg -3' miRNA: 3'- aCU---UCGCGUu-CGaCGACUG--CCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 13139 | 0.73 | 0.175186 |
Target: 5'- gGAGGC-CGAGCgccaauucaacaUGCaGACGGCCGCa -3' miRNA: 3'- aCUUCGcGUUCG------------ACGaCUGCCGGCGg -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 23576 | 0.73 | 0.180055 |
Target: 5'- -cAGGUGCGGGCgggggGCgacGAUGGCCGUCa -3' miRNA: 3'- acUUCGCGUUCGa----CGa--CUGCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 14670 | 0.73 | 0.185045 |
Target: 5'- gGAAGCcgacGCA--CUGCUGAaaagcggauCGGCCGCCg -3' miRNA: 3'- aCUUCG----CGUucGACGACU---------GCCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 32525 | 0.72 | 0.210156 |
Target: 5'- ---cGUGCAGGCUGgUGAUGccggccaggaugcuGCCGCCg -3' miRNA: 3'- acuuCGCGUUCGACgACUGC--------------CGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 21174 | 0.72 | 0.211855 |
Target: 5'- --cAGCGCGGcCUGCUGcGCGGCCuGCUg -3' miRNA: 3'- acuUCGCGUUcGACGAC-UGCCGG-CGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 18765 | 0.72 | 0.211855 |
Target: 5'- cGAuGCGCu-GCUGCUGACcgaGGcCCGCg -3' miRNA: 3'- aCUuCGCGuuCGACGACUG---CC-GGCGg -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 26808 | 0.72 | 0.211855 |
Target: 5'- gGAAucGCaGCGGGCgcGCUGGCGGUgGCCc -3' miRNA: 3'- aCUU--CG-CGUUCGa-CGACUGCCGgCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 27575 | 0.71 | 0.229499 |
Target: 5'- ---cGCGcCGAGaaGCUGGCGGCCgagGCCg -3' miRNA: 3'- acuuCGC-GUUCgaCGACUGCCGG---CGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 18065 | 0.71 | 0.235651 |
Target: 5'- --cGGCGCGGGgUGCgUGcugGGCCGCCg -3' miRNA: 3'- acuUCGCGUUCgACG-ACug-CCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 19529 | 0.71 | 0.248369 |
Target: 5'- --uGGCGCAAGCUGaacuaUGGCGuGCaGCCc -3' miRNA: 3'- acuUCGCGUUCGACg----ACUGC-CGgCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 28891 | 0.71 | 0.248369 |
Target: 5'- --uGGCGU-AGUUGCUGGCcGUCGCCg -3' miRNA: 3'- acuUCGCGuUCGACGACUGcCGGCGG- -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 27775 | 0.71 | 0.248369 |
Target: 5'- aUGAccGGCgGCGAGCcGCUGcCGGCgCGCg -3' miRNA: 3'- -ACU--UCG-CGUUCGaCGACuGCCG-GCGg -5' |
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26652 | 5' | -57.7 | NC_005808.1 | + | 17009 | 0.71 | 0.254938 |
Target: 5'- --cGGCgGCAcGCUGCUgGACGG-CGCCg -3' miRNA: 3'- acuUCG-CGUuCGACGA-CUGCCgGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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