miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26652 5' -57.7 NC_005808.1 + 1028 0.7 0.29737
Target:  5'- aGuGGCuGCAAGCUGCcGugGGCacCGCg -3'
miRNA:   3'- aCuUCG-CGUUCGACGaCugCCG--GCGg -5'
26652 5' -57.7 NC_005808.1 + 1107 0.66 0.455949
Target:  5'- cGcGGCGaCAuGCUGCcGcCGGCCGUg -3'
miRNA:   3'- aCuUCGC-GUuCGACGaCuGCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 2007 0.68 0.35355
Target:  5'- uUGAGGCcCAGGCgcucGCUGGCGaaGUCGCg -3'
miRNA:   3'- -ACUUCGcGUUCGa---CGACUGC--CGGCGg -5'
26652 5' -57.7 NC_005808.1 + 3557 0.78 0.077811
Target:  5'- cGAacAGCGCAgcAGCggGCUGggcguacaccgauccGCGGCCGCCa -3'
miRNA:   3'- aCU--UCGCGU--UCGa-CGAC---------------UGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 3677 0.7 0.268503
Target:  5'- gUGAauGGCGCAuccgaauacacGGCcaacaCUGGCGGCCGCg -3'
miRNA:   3'- -ACU--UCGCGU-----------UCGac---GACUGCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 4271 0.7 0.268503
Target:  5'- --cAGCGCcGGCaUGgUGAUGGCCGUg -3'
miRNA:   3'- acuUCGCGuUCG-ACgACUGCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 4324 0.67 0.416826
Target:  5'- ----aUGCcGGC-GCUGACGGCCGgCa -3'
miRNA:   3'- acuucGCGuUCGaCGACUGCCGGCgG- -5'
26652 5' -57.7 NC_005808.1 + 4807 0.68 0.37092
Target:  5'- cUGgcGCuGCGGGaUUGCUGGCcggcgacaGGUCGCCg -3'
miRNA:   3'- -ACuuCG-CGUUC-GACGACUG--------CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 6691 0.7 0.289934
Target:  5'- -cAAGCGCGcGaaGCUGGCGGCggacuaCGCCa -3'
miRNA:   3'- acUUCGCGUuCgaCGACUGCCG------GCGG- -5'
26652 5' -57.7 NC_005808.1 + 8115 0.68 0.345082
Target:  5'- gGgcGCGCGucauggacGGCgGCaagGACGGCgGCCc -3'
miRNA:   3'- aCuuCGCGU--------UCGaCGa--CUGCCGgCGG- -5'
26652 5' -57.7 NC_005808.1 + 8302 1.12 0.000205
Target:  5'- uUGAAGCGCAAGCUGCUGACGGCCGCCg -3'
miRNA:   3'- -ACUUCGCGUUCGACGACUGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 8670 0.66 0.48655
Target:  5'- aGAAGCGCAaccAGCUuauccaGCaccaGGCCGCa -3'
miRNA:   3'- aCUUCGCGU---UCGA------CGacugCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 9321 0.67 0.398048
Target:  5'- gGcGGCGCAcgucGGCgcgGCgGGCGGCgGCa -3'
miRNA:   3'- aCuUCGCGU----UCGa--CGaCUGCCGgCGg -5'
26652 5' -57.7 NC_005808.1 + 9729 0.68 0.35355
Target:  5'- cGAAGcCGCGGGCgaacUGCUcgugGugGGCgCGCUu -3'
miRNA:   3'- aCUUC-GCGUUCG----ACGA----CugCCG-GCGG- -5'
26652 5' -57.7 NC_005808.1 + 11133 0.69 0.320562
Target:  5'- ---cGUGCGAGCaguucggccUGCUGcugGGCCGCCu -3'
miRNA:   3'- acuuCGCGUUCG---------ACGACug-CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 11576 0.67 0.398048
Target:  5'- cGAAGC-CAugccgcccagGGCcGCcGGCuGGCCGCCg -3'
miRNA:   3'- aCUUCGcGU----------UCGaCGaCUG-CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 12202 0.69 0.336761
Target:  5'- gGAAGCGC-AGC-GCgUGGCGcGUCGCg -3'
miRNA:   3'- aCUUCGCGuUCGaCG-ACUGC-CGGCGg -5'
26652 5' -57.7 NC_005808.1 + 13139 0.73 0.175186
Target:  5'- gGAGGC-CGAGCgccaauucaacaUGCaGACGGCCGCa -3'
miRNA:   3'- aCUUCGcGUUCG------------ACGaCUGCCGGCGg -5'
26652 5' -57.7 NC_005808.1 + 13205 0.68 0.379822
Target:  5'- cGAGGCGC-AGUUGCaGAacgacccacgccUGGCCGgCa -3'
miRNA:   3'- aCUUCGCGuUCGACGaCU------------GCCGGCgG- -5'
26652 5' -57.7 NC_005808.1 + 13325 0.66 0.496966
Target:  5'- gGcGGCGUAGGCUuucGGCaGGUCGCCg -3'
miRNA:   3'- aCuUCGCGUUCGAcgaCUG-CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.