miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26652 5' -57.7 NC_005808.1 + 14047 0.66 0.48655
Target:  5'- aUGGAGCGCGaaAGCccgGCgcugGGCGucGuuGCCu -3'
miRNA:   3'- -ACUUCGCGU--UCGa--CGa---CUGC--CggCGG- -5'
26652 5' -57.7 NC_005808.1 + 14670 0.73 0.185045
Target:  5'- gGAAGCcgacGCA--CUGCUGAaaagcggauCGGCCGCCg -3'
miRNA:   3'- aCUUCG----CGUucGACGACU---------GCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 14900 0.69 0.320562
Target:  5'- gGGucuGCGCGGcgaucuGCUGCUGGcCGGCCucaaguGCCg -3'
miRNA:   3'- aCUu--CGCGUU------CGACGACU-GCCGG------CGG- -5'
26652 5' -57.7 NC_005808.1 + 14922 0.67 0.436134
Target:  5'- -aAGGCGCccAGCgUGCggcGCuGGCCGCCa -3'
miRNA:   3'- acUUCGCGu-UCG-ACGac-UG-CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 15639 0.7 0.282645
Target:  5'- cGAGGUGCuccAGGCcGCUGAuauggcuuacCGGCuCGCCc -3'
miRNA:   3'- aCUUCGCG---UUCGaCGACU----------GCCG-GCGG- -5'
26652 5' -57.7 NC_005808.1 + 15965 0.66 0.476239
Target:  5'- aGcAGCgGCAAGCUGCUG--GGCCucaccuacguGCCc -3'
miRNA:   3'- aCuUCG-CGUUCGACGACugCCGG----------CGG- -5'
26652 5' -57.7 NC_005808.1 + 16515 0.68 0.365648
Target:  5'- cGAGGUGCcGGUgGuCUGGCcgauauagccguacaGGCCGCCu -3'
miRNA:   3'- aCUUCGCGuUCGaC-GACUG---------------CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 16593 0.67 0.44499
Target:  5'- cGAGGCcgaccacGCGAuGgUGUUGGC-GCCGCCg -3'
miRNA:   3'- aCUUCG-------CGUU-CgACGACUGcCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 17009 0.71 0.254938
Target:  5'- --cGGCgGCAcGCUGCUgGACGG-CGCCg -3'
miRNA:   3'- acuUCG-CGUuCGACGA-CUGCCgGCGG- -5'
26652 5' -57.7 NC_005808.1 + 18065 0.71 0.235651
Target:  5'- --cGGCGCGGGgUGCgUGcugGGCCGCCg -3'
miRNA:   3'- acuUCGCGUUCgACG-ACug-CCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 18351 0.67 0.407369
Target:  5'- cGucGC-CAccGGCccGCUGACGGCCGgCa -3'
miRNA:   3'- aCuuCGcGU--UCGa-CGACUGCCGGCgG- -5'
26652 5' -57.7 NC_005808.1 + 18570 0.67 0.407369
Target:  5'- gGAGGC-CGcGCUcGCggUGACGGCCugGCCg -3'
miRNA:   3'- aCUUCGcGUuCGA-CG--ACUGCCGG--CGG- -5'
26652 5' -57.7 NC_005808.1 + 18765 0.72 0.211855
Target:  5'- cGAuGCGCu-GCUGCUGACcgaGGcCCGCg -3'
miRNA:   3'- aCUuCGCGuuCGACGACUG---CC-GGCGg -5'
26652 5' -57.7 NC_005808.1 + 19026 0.7 0.289934
Target:  5'- gUGGGuGCGguAGCc-CUGguaGCGGCCGCCg -3'
miRNA:   3'- -ACUU-CGCguUCGacGAC---UGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 19529 0.71 0.248369
Target:  5'- --uGGCGCAAGCUGaacuaUGGCGuGCaGCCc -3'
miRNA:   3'- acuUCGCGUUCGACg----ACUGC-CGgCGG- -5'
26652 5' -57.7 NC_005808.1 + 20256 0.68 0.388865
Target:  5'- cUGGgucGGCuGUu-GCUGCUGuuGGCCGUCg -3'
miRNA:   3'- -ACU---UCG-CGuuCGACGACugCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 20297 0.68 0.388865
Target:  5'- --cAGUaGCGGGUUGCUcGGCGGCCGg- -3'
miRNA:   3'- acuUCG-CGUUCGACGA-CUGCCGGCgg -5'
26652 5' -57.7 NC_005808.1 + 20691 0.7 0.289934
Target:  5'- -cGAGCGCAGGCcgacaccgaccUGC-GACG-CCGCCu -3'
miRNA:   3'- acUUCGCGUUCG-----------ACGaCUGCcGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 21107 0.66 0.485514
Target:  5'- -uGAGCGCGuuuuGCUugcugguaucgacGCUGcccagcuUGGCCGCCg -3'
miRNA:   3'- acUUCGCGUu---CGA-------------CGACu------GCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 21174 0.72 0.211855
Target:  5'- --cAGCGCGGcCUGCUGcGCGGCCuGCUg -3'
miRNA:   3'- acuUCGCGUUcGACGAC-UGCCGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.