miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26652 5' -57.7 NC_005808.1 + 41605 0.69 0.320562
Target:  5'- aGuGGCGCGGGCagcggGCUGACGGUgaaggGCUg -3'
miRNA:   3'- aCuUCGCGUUCGa----CGACUGCCGg----CGG- -5'
26652 5' -57.7 NC_005808.1 + 41460 0.69 0.327779
Target:  5'- -cGAGCGCAAacggccGCUGCUcaugaucGACGGCaaGCCu -3'
miRNA:   3'- acUUCGCGUU------CGACGA-------CUGCCGg-CGG- -5'
26652 5' -57.7 NC_005808.1 + 41351 0.67 0.449953
Target:  5'- cGAucuuGCGUcugauGGCuuuuucugucagcccUGUuaUGACGGCCGCCa -3'
miRNA:   3'- aCUu---CGCGu----UCG---------------ACG--ACUGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 40942 0.68 0.379822
Target:  5'- cGAGGUGCAAGacCUGCUacUGGaaGCCa -3'
miRNA:   3'- aCUUCGCGUUC--GACGAcuGCCggCGG- -5'
26652 5' -57.7 NC_005808.1 + 40281 0.74 0.14029
Target:  5'- cGAGGCGCAcGGCa--UGGCGGUCGCUg -3'
miRNA:   3'- aCUUCGCGU-UCGacgACUGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 39927 0.69 0.304953
Target:  5'- -uGAGCGCGGcccggcGCUGCUcgGGCGuGCCGaCCa -3'
miRNA:   3'- acUUCGCGUU------CGACGA--CUGC-CGGC-GG- -5'
26652 5' -57.7 NC_005808.1 + 39661 0.66 0.48655
Target:  5'- gUGccGCGCGAcGC-GgUGugGGCCGgCa -3'
miRNA:   3'- -ACuuCGCGUU-CGaCgACugCCGGCgG- -5'
26652 5' -57.7 NC_005808.1 + 39053 0.66 0.507482
Target:  5'- uUGAccGCGCAuuuuGCUucGCUGGCGGUgGUa -3'
miRNA:   3'- -ACUu-CGCGUu---CGA--CGACUGCCGgCGg -5'
26652 5' -57.7 NC_005808.1 + 37531 0.66 0.48655
Target:  5'- uUGAAcUGCAAcguGCcGCgcaGGCGGCCGUCg -3'
miRNA:   3'- -ACUUcGCGUU---CGaCGa--CUGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 37490 0.68 0.345082
Target:  5'- --cGGCGCcAGCcgcaccggacGCUGGgcCGGCCGCCu -3'
miRNA:   3'- acuUCGCGuUCGa---------CGACU--GCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 37444 0.8 0.051028
Target:  5'- -aGGGCGUGAGCaGC-GACGGCCGCCu -3'
miRNA:   3'- acUUCGCGUUCGaCGaCUGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 37329 0.7 0.275502
Target:  5'- cGuGGCGCAGcauggcaucgcGCUGCg--UGGCCGCCu -3'
miRNA:   3'- aCuUCGCGUU-----------CGACGacuGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 37191 0.68 0.35355
Target:  5'- gUGGAGCGUAcgcagaAGgUGCUcGCGGCgCGCa -3'
miRNA:   3'- -ACUUCGCGU------UCgACGAcUGCCG-GCGg -5'
26652 5' -57.7 NC_005808.1 + 36768 0.66 0.496966
Target:  5'- cGAc-CGCAcGgUGCUG-CGGCaCGCCa -3'
miRNA:   3'- aCUucGCGUuCgACGACuGCCG-GCGG- -5'
26652 5' -57.7 NC_005808.1 + 36489 0.66 0.470104
Target:  5'- --cAGCGCAGGCcggucuUGCcgcagcguuugcaggUGACGGCgCGCg -3'
miRNA:   3'- acuUCGCGUUCG------ACG---------------ACUGCCG-GCGg -5'
26652 5' -57.7 NC_005808.1 + 36295 0.68 0.388865
Target:  5'- cGggGCGCuGGGUUaCaccagGuCGGCCGCCg -3'
miRNA:   3'- aCuuCGCG-UUCGAcGa----CuGCCGGCGG- -5'
26652 5' -57.7 NC_005808.1 + 36264 0.66 0.476239
Target:  5'- -cGGGCGCuuuGGCUGg-GGCGGaacgCGCCg -3'
miRNA:   3'- acUUCGCGu--UCGACgaCUGCCg---GCGG- -5'
26652 5' -57.7 NC_005808.1 + 35825 0.68 0.345082
Target:  5'- cGGAGaaaGCAGGCUugcccucgccGUUGACGGUCuugGCCu -3'
miRNA:   3'- aCUUCg--CGUUCGA----------CGACUGCCGG---CGG- -5'
26652 5' -57.7 NC_005808.1 + 35250 0.67 0.416826
Target:  5'- uUGAAGC-CGGGCaccgGAUGGCCgGCCa -3'
miRNA:   3'- -ACUUCGcGUUCGacgaCUGCCGG-CGG- -5'
26652 5' -57.7 NC_005808.1 + 35167 0.67 0.397123
Target:  5'- cGAAGC-CGAaCUGCUGGcCGGCCauccgguGCCc -3'
miRNA:   3'- aCUUCGcGUUcGACGACU-GCCGG-------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.