Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26653 | 3' | -56.4 | NC_005808.1 | + | 8998 | 1.08 | 0.000604 |
Target: 5'- gUUCGGCGAACUGUCCACGCCCGAAGCc -3' miRNA: 3'- -AAGCCGCUUGACAGGUGCGGGCUUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 15376 | 0.75 | 0.171163 |
Target: 5'- cUCGGUGAGCgcGUCCGCGUgCGGgccGGCg -3' miRNA: 3'- aAGCCGCUUGa-CAGGUGCGgGCU---UCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 16066 | 0.74 | 0.180849 |
Target: 5'- -cCGGCGAcCUGUCCcuGCGCgCGgcGCa -3' miRNA: 3'- aaGCCGCUuGACAGG--UGCGgGCuuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 29791 | 0.73 | 0.224577 |
Target: 5'- uUUCGGCauacGCUGUCuCGCGCUCGAuGCc -3' miRNA: 3'- -AAGCCGcu--UGACAG-GUGCGGGCUuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 29287 | 0.73 | 0.224577 |
Target: 5'- cUUCGGCGGACUGgacgCCaugcgcGCGUCCGAccuGCc -3' miRNA: 3'- -AAGCCGCUUGACa---GG------UGCGGGCUu--CG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 32746 | 0.72 | 0.255585 |
Target: 5'- gUCGGCGAACUGcucgggcUUCACGUCgGGcAGCu -3' miRNA: 3'- aAGCCGCUUGAC-------AGGUGCGGgCU-UCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 22690 | 0.71 | 0.291496 |
Target: 5'- aUCaGCGAcuaccuGCUG-CCGCGCgCGggGCg -3' miRNA: 3'- aAGcCGCU------UGACaGGUGCGgGCuuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 27337 | 0.71 | 0.304315 |
Target: 5'- -gCGGCGAACUgcgGUUCAUugccucggccaagaGCCUGggGCg -3' miRNA: 3'- aaGCCGCUUGA---CAGGUG--------------CGGGCuuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 13015 | 0.71 | 0.314406 |
Target: 5'- aUUCGcGCGAACa-UCC-CGCCCGAgaAGCu -3' miRNA: 3'- -AAGC-CGCUUGacAGGuGCGGGCU--UCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 17674 | 0.71 | 0.314406 |
Target: 5'- gUCGGCGGGCUGg--GCGUaggCGAAGCg -3' miRNA: 3'- aAGCCGCUUGACaggUGCGg--GCUUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 31006 | 0.7 | 0.32234 |
Target: 5'- -aCGcGCGAcCUGUCCACGggcuugccggCCGAGGCa -3' miRNA: 3'- aaGC-CGCUuGACAGGUGCg---------GGCUUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 10658 | 0.7 | 0.336994 |
Target: 5'- -gCGGUGcaGGCUGcgcgccuggguaCUACGCCCGAGGCg -3' miRNA: 3'- aaGCCGC--UUGACa-----------GGUGCGGGCUUCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 8156 | 0.7 | 0.347031 |
Target: 5'- gUCGGCGcuGC-GUCCcugcgcguGCGCCCGGAuGCu -3' miRNA: 3'- aAGCCGCu-UGaCAGG--------UGCGGGCUU-CG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 9558 | 0.7 | 0.364228 |
Target: 5'- -aCGGCGGaacagGCUGgcaUgACGCCCGAAGa -3' miRNA: 3'- aaGCCGCU-----UGACa--GgUGCGGGCUUCg -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 3852 | 0.7 | 0.364228 |
Target: 5'- cUCGGCGAAgUUGUaCCAgGCgCCGucGCu -3' miRNA: 3'- aAGCCGCUU-GACA-GGUgCG-GGCuuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 24649 | 0.7 | 0.364228 |
Target: 5'- -cCGGCGGGCcaggauggUGUugUCGCGCCCGccGCg -3' miRNA: 3'- aaGCCGCUUG--------ACA--GGUGCGGGCuuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 1578 | 0.69 | 0.373045 |
Target: 5'- -gCGGCGAAUaaggGggcgCCAUGUCCGAccAGCa -3' miRNA: 3'- aaGCCGCUUGa---Ca---GGUGCGGGCU--UCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 22471 | 0.69 | 0.373045 |
Target: 5'- -cUGGCGAAC-GUCaCGCGCuuGAuGCu -3' miRNA: 3'- aaGCCGCUUGaCAG-GUGCGggCUuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 31306 | 0.69 | 0.382006 |
Target: 5'- -cCGGCucguAGCUGggCCGCGCgCCGggGUu -3' miRNA: 3'- aaGCCGc---UUGACa-GGUGCG-GGCuuCG- -5' |
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26653 | 3' | -56.4 | NC_005808.1 | + | 32869 | 0.69 | 0.382006 |
Target: 5'- gUCGGCGccgaGAUUGU-CGCGCCCGAc-- -3' miRNA: 3'- aAGCCGC----UUGACAgGUGCGGGCUucg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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