miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 3' -56.4 NC_005808.1 + 804 0.66 0.553584
Target:  5'- -cCGGCGAcGCg--CCGCGCCC--AGCc -3'
miRNA:   3'- aaGCCGCU-UGacaGGUGCGGGcuUCG- -5'
26653 3' -56.4 NC_005808.1 + 1355 0.67 0.49987
Target:  5'- gUCGGCGGccuuGCgcaUCCgGCGaCCGAAGCg -3'
miRNA:   3'- aAGCCGCU----UGac-AGG-UGCgGGCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 1578 0.69 0.373045
Target:  5'- -gCGGCGAAUaaggGggcgCCAUGUCCGAccAGCa -3'
miRNA:   3'- aaGCCGCUUGa---Ca---GGUGCGGGCU--UCG- -5'
26653 3' -56.4 NC_005808.1 + 3080 0.68 0.438683
Target:  5'- cUUCGGCGAugagcacuuguGCUGUCU-CGaCCUGAuGCg -3'
miRNA:   3'- -AAGCCGCU-----------UGACAGGuGC-GGGCUuCG- -5'
26653 3' -56.4 NC_005808.1 + 3852 0.7 0.364228
Target:  5'- cUCGGCGAAgUUGUaCCAgGCgCCGucGCu -3'
miRNA:   3'- aAGCCGCUU-GACA-GGUgCG-GGCuuCG- -5'
26653 3' -56.4 NC_005808.1 + 6646 0.67 0.49987
Target:  5'- cUUGGcCGGAgUGUCCGCGCUCauGGUc -3'
miRNA:   3'- aAGCC-GCUUgACAGGUGCGGGcuUCG- -5'
26653 3' -56.4 NC_005808.1 + 6986 0.69 0.409735
Target:  5'- aUUC-GCGGAagcgcGUCCGCGCCCGAuucGCc -3'
miRNA:   3'- -AAGcCGCUUga---CAGGUGCGGGCUu--CG- -5'
26653 3' -56.4 NC_005808.1 + 7254 0.69 0.391109
Target:  5'- gUCGGCcgcccaggucuuGAACUGcugCUugGCCuCGggGCc -3'
miRNA:   3'- aAGCCG------------CUUGACa--GGugCGG-GCuuCG- -5'
26653 3' -56.4 NC_005808.1 + 7496 0.66 0.586638
Target:  5'- gUCGaG-GAAgUGUCCggGCGCCCGcuGCu -3'
miRNA:   3'- aAGC-CgCUUgACAGG--UGCGGGCuuCG- -5'
26653 3' -56.4 NC_005808.1 + 8156 0.7 0.347031
Target:  5'- gUCGGCGcuGC-GUCCcugcgcguGCGCCCGGAuGCu -3'
miRNA:   3'- aAGCCGCu-UGaCAGG--------UGCGGGCUU-CG- -5'
26653 3' -56.4 NC_005808.1 + 8529 0.68 0.462663
Target:  5'- -cCGGCGAACUugcccagguaucgcaGgCCGCGCUCGAccucauccugGGCg -3'
miRNA:   3'- aaGCCGCUUGA---------------CaGGUGCGGGCU----------UCG- -5'
26653 3' -56.4 NC_005808.1 + 8998 1.08 0.000604
Target:  5'- gUUCGGCGAACUGUCCACGCCCGAAGCc -3'
miRNA:   3'- -AAGCCGCUUGACAGGUGCGGGCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 9100 0.66 0.579992
Target:  5'- gUUCGGCuuuacgucuggugacGAACUGgugcgCCGCcuGCUgGAAGCg -3'
miRNA:   3'- -AAGCCG---------------CUUGACa----GGUG--CGGgCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 9558 0.7 0.364228
Target:  5'- -aCGGCGGaacagGCUGgcaUgACGCCCGAAGa -3'
miRNA:   3'- aaGCCGCU-----UGACa--GgUGCGGGCUUCg -5'
26653 3' -56.4 NC_005808.1 + 9665 0.66 0.542684
Target:  5'- -aCGuCGAACU---CACGCCCGAGGUg -3'
miRNA:   3'- aaGCcGCUUGAcagGUGCGGGCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 10367 0.66 0.564549
Target:  5'- -cUGGCGAAgUGg-CAC-CCCGAGGUg -3'
miRNA:   3'- aaGCCGCUUgACagGUGcGGGCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 10658 0.7 0.336994
Target:  5'- -gCGGUGcaGGCUGcgcgccuggguaCUACGCCCGAGGCg -3'
miRNA:   3'- aaGCCGC--UUGACa-----------GGUGCGGGCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 11613 0.68 0.457609
Target:  5'- -cCGGCGGGCaGUCCuaucaggAUGCCCGcucGCa -3'
miRNA:   3'- aaGCCGCUUGaCAGG-------UGCGGGCuu-CG- -5'
26653 3' -56.4 NC_005808.1 + 11998 0.68 0.428902
Target:  5'- gUCGGU--ACUGUCCA-GCCUGGgcacGGCg -3'
miRNA:   3'- aAGCCGcuUGACAGGUgCGGGCU----UCG- -5'
26653 3' -56.4 NC_005808.1 + 13015 0.71 0.314406
Target:  5'- aUUCGcGCGAACa-UCC-CGCCCGAgaAGCu -3'
miRNA:   3'- -AAGC-CGCUUGacAGGuGCGGGCU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.