Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 31535 | 0.67 | 0.606501 |
Target: 5'- uGUGuuGCCGuggaaacAGCGCCucgGUUCGCGGg -3' miRNA: 3'- -CGCggCGGCua-----UCGCGG---UAAGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 28606 | 0.66 | 0.686181 |
Target: 5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3' miRNA: 3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 27828 | 0.76 | 0.195035 |
Target: 5'- cGCGCUGCCcgcGGUGGCGCCGgcCGCGc- -3' miRNA: 3'- -CGCGGCGG---CUAUCGCGGUaaGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 27646 | 0.66 | 0.640724 |
Target: 5'- gGCGCCGCCugcugccGGUGCCcUUUACGc- -3' miRNA: 3'- -CGCGGCGGcua----UCGCGGuAAGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 27596 | 0.66 | 0.65213 |
Target: 5'- gGCGgCGCCaGAUGGCGUgGUcgUCGCc-- -3' miRNA: 3'- -CGCgGCGG-CUAUCGCGgUA--AGUGuua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 27493 | 0.73 | 0.292168 |
Target: 5'- uGCgGCCGCCGGgcgcgguGCGCCAggcgCGCGAc -3' miRNA: 3'- -CG-CGGCGGCUau-----CGCGGUaa--GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 27063 | 0.66 | 0.640724 |
Target: 5'- cGCGCCGCUG-UAGCcCCAguucUUGCAGc -3' miRNA: 3'- -CGCGGCGGCuAUCGcGGUa---AGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 26794 | 0.68 | 0.550061 |
Target: 5'- cGCGCUGgCGGUGGC-CCGgcUUUGCAAUa -3' miRNA: 3'- -CGCGGCgGCUAUCGcGGU--AAGUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 25829 | 0.74 | 0.236307 |
Target: 5'- cGgGCCGCCGuUGGCGCCggUCAg--- -3' miRNA: 3'- -CgCGGCGGCuAUCGCGGuaAGUguua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 25671 | 0.67 | 0.606501 |
Target: 5'- cGCGCCGCCG-UGGuUGCCAcugccugggcCGCAGa -3' miRNA: 3'- -CGCGGCGGCuAUC-GCGGUaa--------GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 25537 | 0.68 | 0.550061 |
Target: 5'- cCGCCGCCGGcAGCGCCcccguagC-CGAUg -3' miRNA: 3'- cGCGGCGGCUaUCGCGGuaa----GuGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 25372 | 0.66 | 0.640724 |
Target: 5'- aGCGCCGgUGGcAGgGCCGgccgCACGAc -3' miRNA: 3'- -CGCGGCgGCUaUCgCGGUaa--GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 23826 | 0.66 | 0.686181 |
Target: 5'- gGCGCaucgGcCCGGUGGCGCCGgcauggCGCu-- -3' miRNA: 3'- -CGCGg---C-GGCUAUCGCGGUaa----GUGuua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 23764 | 0.66 | 0.640724 |
Target: 5'- gGCGCCaccggGCCGAU-GCGCCGcggcUACGAa -3' miRNA: 3'- -CGCGG-----CGGCUAuCGCGGUaa--GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 23689 | 0.71 | 0.357834 |
Target: 5'- cGgGCCggacacguacagGCCGGUAGCGCCcaggUCGCGGg -3' miRNA: 3'- -CgCGG------------CGGCUAUCGCGGua--AGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 23586 | 0.68 | 0.527911 |
Target: 5'- uGCGCCGCCugGAaGGCGCgc-UCGCGGa -3' miRNA: 3'- -CGCGGCGG--CUaUCGCGguaAGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 23158 | 0.75 | 0.206139 |
Target: 5'- gGCGCCGCCGuUGGCGUCGgg-GCGAg -3' miRNA: 3'- -CGCGGCGGCuAUCGCGGUaagUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 20603 | 0.68 | 0.561244 |
Target: 5'- gGCGCCGCaucguGUGGCGCU-UUCugGAa -3' miRNA: 3'- -CGCGGCGgc---UAUCGCGGuAAGugUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 19046 | 0.68 | 0.527911 |
Target: 5'- aGCgGCCGCCGGcGGCGUCGaUCAg--- -3' miRNA: 3'- -CG-CGGCGGCUaUCGCGGUaAGUguua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 18523 | 0.68 | 0.550061 |
Target: 5'- aCGCCGCCG---GCGCCGcgaccgUCACGu- -3' miRNA: 3'- cGCGGCGGCuauCGCGGUa-----AGUGUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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