Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 17002 | 0.67 | 0.62931 |
Target: 5'- aCGCUGCUGGacGGCGCCGUgcccUACGAa -3' miRNA: 3'- cGCGGCGGCUa-UCGCGGUAa---GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 16886 | 0.67 | 0.617899 |
Target: 5'- uGCGCCGCgUGAacuGCGCCGccugggCGCGAc -3' miRNA: 3'- -CGCGGCG-GCUau-CGCGGUaa----GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 20603 | 0.68 | 0.561244 |
Target: 5'- gGCGCCGCaucguGUGGCGCU-UUCugGAa -3' miRNA: 3'- -CGCGGCGgc---UAUCGCGGuAAGugUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 16825 | 0.68 | 0.550061 |
Target: 5'- aCGUCGCCGGUGGCuaCGccCACGAg -3' miRNA: 3'- cGCGGCGGCUAUCGcgGUaaGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 39098 | 0.66 | 0.640724 |
Target: 5'- cGCGCCGCauaaauuucagCGAc-GCGCCGggUCACGu- -3' miRNA: 3'- -CGCGGCG-----------GCUauCGCGGUa-AGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 33437 | 0.67 | 0.62931 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 41537 | 0.67 | 0.605362 |
Target: 5'- uUGCCGUCGAUcaugagcAGCGgCCGUUUGCGc- -3' miRNA: 3'- cGCGGCGGCUA-------UCGC-GGUAAGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 18523 | 0.68 | 0.550061 |
Target: 5'- aCGCCGCCG---GCGCCGcgaccgUCACGu- -3' miRNA: 3'- cGCGGCGGCuauCGCGGUa-----AGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 33485 | 0.67 | 0.62931 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 26794 | 0.68 | 0.550061 |
Target: 5'- cGCGCUGgCGGUGGC-CCGgcUUUGCAAUa -3' miRNA: 3'- -CGCGGCgGCUAUCGcGGU--AAGUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 25671 | 0.67 | 0.606501 |
Target: 5'- cGCGCCGCCG-UGGuUGCCAcugccugggcCGCAGa -3' miRNA: 3'- -CGCGGCGGCuAUC-GCGGUaa--------GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 8282 | 0.67 | 0.62931 |
Target: 5'- -gGCCGCCGAccAGCgcgacuacgagGCCGUgCGCGAUg -3' miRNA: 3'- cgCGGCGGCUa-UCG-----------CGGUAaGUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 9291 | 0.67 | 0.583786 |
Target: 5'- cUGCCGCCGGgcGCGCCg--CAgAAc -3' miRNA: 3'- cGCGGCGGCUauCGCGGuaaGUgUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 4855 | 0.67 | 0.572489 |
Target: 5'- aGCGCCaGCCGGc-GUGCUGggCGCAGUg -3' miRNA: 3'- -CGCGG-CGGCUauCGCGGUaaGUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 37636 | 0.68 | 0.561244 |
Target: 5'- aGCGCCGCgaugccccgcuCGAUGGCGuCCugcuugagCACAGg -3' miRNA: 3'- -CGCGGCG-----------GCUAUCGC-GGuaa-----GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 7146 | 0.68 | 0.550061 |
Target: 5'- cGCGCCGUgGGUAG-GCCGcggcgUCAUGAa -3' miRNA: 3'- -CGCGGCGgCUAUCgCGGUa----AGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 28606 | 0.66 | 0.686181 |
Target: 5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3' miRNA: 3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 33671 | 0.66 | 0.640724 |
Target: 5'- cGUGCCGCCagcGGUGGCcguGCCGgaUUCGCc-- -3' miRNA: 3'- -CGCGGCGG---CUAUCG---CGGU--AAGUGuua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 25372 | 0.66 | 0.640724 |
Target: 5'- aGCGCCGgUGGcAGgGCCGgccgCACGAc -3' miRNA: 3'- -CGCGGCgGCUaUCgCGGUaa--GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 33389 | 0.67 | 0.62931 |
Target: 5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3' miRNA: 3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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