miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 5' -54.3 NC_005808.1 + 8964 1.09 0.000814
Target:  5'- cGCGCCGCCGAUAGCGCCAUUCACAAUg -3'
miRNA:   3'- -CGCGGCGGCUAUCGCGGUAAGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 27828 0.76 0.195035
Target:  5'- cGCGCUGCCcgcGGUGGCGCCGgcCGCGc- -3'
miRNA:   3'- -CGCGGCGG---CUAUCGCGGUaaGUGUua -5'
26653 5' -54.3 NC_005808.1 + 23158 0.75 0.206139
Target:  5'- gGCGCCGCCGuUGGCGUCGgg-GCGAg -3'
miRNA:   3'- -CGCGGCGGCuAUCGCGGUaagUGUUa -5'
26653 5' -54.3 NC_005808.1 + 25829 0.74 0.236307
Target:  5'- cGgGCCGCCGuUGGCGCCggUCAg--- -3'
miRNA:   3'- -CgCGGCGGCuAUCGCGGuaAGUguua -5'
26653 5' -54.3 NC_005808.1 + 289 0.74 0.263035
Target:  5'- cGCGCCaauGCCGAgguGCGCCAgUUCGCcGUg -3'
miRNA:   3'- -CGCGG---CGGCUau-CGCGGU-AAGUGuUA- -5'
26653 5' -54.3 NC_005808.1 + 33978 0.73 0.277296
Target:  5'- uGCGCCGCCcaGGUGuGCGCCg--CGCAGa -3'
miRNA:   3'- -CGCGGCGG--CUAU-CGCGGuaaGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 27493 0.73 0.292168
Target:  5'- uGCgGCCGCCGGgcgcgguGCGCCAggcgCGCGAc -3'
miRNA:   3'- -CG-CGGCGGCUau-----CGCGGUaa--GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 40553 0.73 0.299834
Target:  5'- cGUGUCGUCGGUAuagauuGCGCCGUUgGCGAg -3'
miRNA:   3'- -CGCGGCGGCUAU------CGCGGUAAgUGUUa -5'
26653 5' -54.3 NC_005808.1 + 18384 0.72 0.323763
Target:  5'- -gGCCuuGCCGAUGGCGCCggUgGCGGc -3'
miRNA:   3'- cgCGG--CGGCUAUCGCGGuaAgUGUUa -5'
26653 5' -54.3 NC_005808.1 + 23689 0.71 0.357834
Target:  5'- cGgGCCggacacguacagGCCGGUAGCGCCcaggUCGCGGg -3'
miRNA:   3'- -CgCGG------------CGGCUAUCGCGGua--AGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 2993 0.71 0.366736
Target:  5'- aGUGCCGCCGaAUAGCGCa----GCAGc -3'
miRNA:   3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5'
26653 5' -54.3 NC_005808.1 + 9261 0.71 0.375788
Target:  5'- cGCGCCGCCGAgcaggccaacgUcgacGGCGCCAaguugUCGCu-- -3'
miRNA:   3'- -CGCGGCGGCU-----------A----UCGCGGUa----AGUGuua -5'
26653 5' -54.3 NC_005808.1 + 12683 0.71 0.384991
Target:  5'- aGCGauGCCGAgcgcgucGGCGCCAUgCGCAAa -3'
miRNA:   3'- -CGCggCGGCUa------UCGCGGUAaGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 11592 0.7 0.413476
Target:  5'- aGgGCCGCCGGcUGGCcGCCGggcaGCAGUg -3'
miRNA:   3'- -CgCGGCGGCU-AUCG-CGGUaag-UGUUA- -5'
26653 5' -54.3 NC_005808.1 + 7298 0.7 0.423256
Target:  5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3'
miRNA:   3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5'
26653 5' -54.3 NC_005808.1 + 41504 0.69 0.47414
Target:  5'- uCGCCGUCGAUGGUgaaggacaGCCGUaUCGCGc- -3'
miRNA:   3'- cGCGGCGGCUAUCG--------CGGUA-AGUGUua -5'
26653 5' -54.3 NC_005808.1 + 14869 0.69 0.47414
Target:  5'- aGCGCCGCCGA-GGUGCagguUUCcaGCGAc -3'
miRNA:   3'- -CGCGGCGGCUaUCGCGgu--AAG--UGUUa -5'
26653 5' -54.3 NC_005808.1 + 1520 0.69 0.47414
Target:  5'- -gGCCGCCGAccGCGCCG-UCAa--- -3'
miRNA:   3'- cgCGGCGGCUauCGCGGUaAGUguua -5'
26653 5' -54.3 NC_005808.1 + 38089 0.69 0.49534
Target:  5'- uGCGCucaagCGCCuGUGGCGCCGcgCGCAu- -3'
miRNA:   3'- -CGCG-----GCGGcUAUCGCGGUaaGUGUua -5'
26653 5' -54.3 NC_005808.1 + 6674 0.69 0.49534
Target:  5'- uGCGCCacGCCGAUguucAGgGCCGUguUCAUGAa -3'
miRNA:   3'- -CGCGG--CGGCUA----UCgCGGUA--AGUGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.