Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26653 | 5' | -54.3 | NC_005808.1 | + | 8964 | 1.09 | 0.000814 |
Target: 5'- cGCGCCGCCGAUAGCGCCAUUCACAAUg -3' miRNA: 3'- -CGCGGCGGCUAUCGCGGUAAGUGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 27828 | 0.76 | 0.195035 |
Target: 5'- cGCGCUGCCcgcGGUGGCGCCGgcCGCGc- -3' miRNA: 3'- -CGCGGCGG---CUAUCGCGGUaaGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 23158 | 0.75 | 0.206139 |
Target: 5'- gGCGCCGCCGuUGGCGUCGgg-GCGAg -3' miRNA: 3'- -CGCGGCGGCuAUCGCGGUaagUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 25829 | 0.74 | 0.236307 |
Target: 5'- cGgGCCGCCGuUGGCGCCggUCAg--- -3' miRNA: 3'- -CgCGGCGGCuAUCGCGGuaAGUguua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 289 | 0.74 | 0.263035 |
Target: 5'- cGCGCCaauGCCGAgguGCGCCAgUUCGCcGUg -3' miRNA: 3'- -CGCGG---CGGCUau-CGCGGU-AAGUGuUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 33978 | 0.73 | 0.277296 |
Target: 5'- uGCGCCGCCcaGGUGuGCGCCg--CGCAGa -3' miRNA: 3'- -CGCGGCGG--CUAU-CGCGGuaaGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 27493 | 0.73 | 0.292168 |
Target: 5'- uGCgGCCGCCGGgcgcgguGCGCCAggcgCGCGAc -3' miRNA: 3'- -CG-CGGCGGCUau-----CGCGGUaa--GUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 40553 | 0.73 | 0.299834 |
Target: 5'- cGUGUCGUCGGUAuagauuGCGCCGUUgGCGAg -3' miRNA: 3'- -CGCGGCGGCUAU------CGCGGUAAgUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 18384 | 0.72 | 0.323763 |
Target: 5'- -gGCCuuGCCGAUGGCGCCggUgGCGGc -3' miRNA: 3'- cgCGG--CGGCUAUCGCGGuaAgUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 23689 | 0.71 | 0.357834 |
Target: 5'- cGgGCCggacacguacagGCCGGUAGCGCCcaggUCGCGGg -3' miRNA: 3'- -CgCGG------------CGGCUAUCGCGGua--AGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 2993 | 0.71 | 0.366736 |
Target: 5'- aGUGCCGCCGaAUAGCGCa----GCAGc -3' miRNA: 3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 9261 | 0.71 | 0.375788 |
Target: 5'- cGCGCCGCCGAgcaggccaacgUcgacGGCGCCAaguugUCGCu-- -3' miRNA: 3'- -CGCGGCGGCU-----------A----UCGCGGUa----AGUGuua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 12683 | 0.71 | 0.384991 |
Target: 5'- aGCGauGCCGAgcgcgucGGCGCCAUgCGCAAa -3' miRNA: 3'- -CGCggCGGCUa------UCGCGGUAaGUGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 11592 | 0.7 | 0.413476 |
Target: 5'- aGgGCCGCCGGcUGGCcGCCGggcaGCAGUg -3' miRNA: 3'- -CgCGGCGGCU-AUCG-CGGUaag-UGUUA- -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 7298 | 0.7 | 0.423256 |
Target: 5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3' miRNA: 3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 41504 | 0.69 | 0.47414 |
Target: 5'- uCGCCGUCGAUGGUgaaggacaGCCGUaUCGCGc- -3' miRNA: 3'- cGCGGCGGCUAUCG--------CGGUA-AGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 14869 | 0.69 | 0.47414 |
Target: 5'- aGCGCCGCCGA-GGUGCagguUUCcaGCGAc -3' miRNA: 3'- -CGCGGCGGCUaUCGCGgu--AAG--UGUUa -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 1520 | 0.69 | 0.47414 |
Target: 5'- -gGCCGCCGAccGCGCCG-UCAa--- -3' miRNA: 3'- cgCGGCGGCUauCGCGGUaAGUguua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 38089 | 0.69 | 0.49534 |
Target: 5'- uGCGCucaagCGCCuGUGGCGCCGcgCGCAu- -3' miRNA: 3'- -CGCG-----GCGGcUAUCGCGGUaaGUGUua -5' |
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26653 | 5' | -54.3 | NC_005808.1 | + | 6674 | 0.69 | 0.49534 |
Target: 5'- uGCGCCacGCCGAUguucAGgGCCGUguUCAUGAa -3' miRNA: 3'- -CGCGG--CGGCUA----UCgCGGUA--AGUGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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