miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 5' -54.3 NC_005808.1 + 289 0.74 0.263035
Target:  5'- cGCGCCaauGCCGAgguGCGCCAgUUCGCcGUg -3'
miRNA:   3'- -CGCGG---CGGCUau-CGCGGU-AAGUGuUA- -5'
26653 5' -54.3 NC_005808.1 + 461 0.66 0.663516
Target:  5'- cGUGCUGCUGGUGGgCGCCcUggGCAu- -3'
miRNA:   3'- -CGCGGCGGCUAUC-GCGGuAagUGUua -5'
26653 5' -54.3 NC_005808.1 + 739 0.66 0.686181
Target:  5'- gGCGCCGCCGuaGGCgGCCuggUgGCu-- -3'
miRNA:   3'- -CGCGGCGGCuaUCG-CGGua-AgUGuua -5'
26653 5' -54.3 NC_005808.1 + 1208 0.68 0.538947
Target:  5'- cCGCCGCCG-UAGCGCgAgcuaACGGUu -3'
miRNA:   3'- cGCGGCGGCuAUCGCGgUaag-UGUUA- -5'
26653 5' -54.3 NC_005808.1 + 1520 0.69 0.47414
Target:  5'- -gGCCGCCGAccGCGCCG-UCAa--- -3'
miRNA:   3'- cgCGGCGGCUauCGCGGUaAGUguua -5'
26653 5' -54.3 NC_005808.1 + 2153 0.66 0.686181
Target:  5'- cGCGCCGCCGuacacguUGGCGaacagUUGCGAg -3'
miRNA:   3'- -CGCGGCGGCu------AUCGCggua-AGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 2993 0.71 0.366736
Target:  5'- aGUGCCGCCGaAUAGCGCa----GCAGc -3'
miRNA:   3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5'
26653 5' -54.3 NC_005808.1 + 3609 0.67 0.606501
Target:  5'- -gGCCGUguauuCGGauGCGCCAUUCACGc- -3'
miRNA:   3'- cgCGGCG-----GCUauCGCGGUAAGUGUua -5'
26653 5' -54.3 NC_005808.1 + 4016 0.66 0.65213
Target:  5'- cGCGCCgGCCaccAGCGUCAUgccgCGCGGg -3'
miRNA:   3'- -CGCGG-CGGcuaUCGCGGUAa---GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 4855 0.67 0.572489
Target:  5'- aGCGCCaGCCGGc-GUGCUGggCGCAGUg -3'
miRNA:   3'- -CGCGG-CGGCUauCGCGGUaaGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 6674 0.69 0.49534
Target:  5'- uGCGCCacGCCGAUguucAGgGCCGUguUCAUGAa -3'
miRNA:   3'- -CGCGG--CGGCUA----UCgCGGUA--AGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 7146 0.68 0.550061
Target:  5'- cGCGCCGUgGGUAG-GCCGcggcgUCAUGAa -3'
miRNA:   3'- -CGCGGCGgCUAUCgCGGUa----AGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 7298 0.7 0.423256
Target:  5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3'
miRNA:   3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5'
26653 5' -54.3 NC_005808.1 + 8282 0.67 0.62931
Target:  5'- -gGCCGCCGAccAGCgcgacuacgagGCCGUgCGCGAUg -3'
miRNA:   3'- cgCGGCGGCUa-UCG-----------CGGUAaGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 8964 1.09 0.000814
Target:  5'- cGCGCCGCCGAUAGCGCCAUUCACAAUg -3'
miRNA:   3'- -CGCGGCGGCUAUCGCGGUAAGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 9071 0.69 0.49534
Target:  5'- uGCGCCGCCugcuGGaAGCGCCcccgCGCGGc -3'
miRNA:   3'- -CGCGGCGG----CUaUCGCGGuaa-GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 9261 0.71 0.375788
Target:  5'- cGCGCCGCCGAgcaggccaacgUcgacGGCGCCAaguugUCGCu-- -3'
miRNA:   3'- -CGCGGCGGCU-----------A----UCGCGGUa----AGUGuua -5'
26653 5' -54.3 NC_005808.1 + 9291 0.67 0.583786
Target:  5'- cUGCCGCCGGgcGCGCCg--CAgAAc -3'
miRNA:   3'- cGCGGCGGCUauCGCGGuaaGUgUUa -5'
26653 5' -54.3 NC_005808.1 + 10408 0.67 0.606501
Target:  5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3'
miRNA:   3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 11592 0.7 0.413476
Target:  5'- aGgGCCGCCGGcUGGCcGCCGggcaGCAGUg -3'
miRNA:   3'- -CgCGGCGGCU-AUCG-CGGUaag-UGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.