miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 5' -54.3 NC_005808.1 + 27646 0.66 0.640724
Target:  5'- gGCGCCGCCugcugccGGUGCCcUUUACGc- -3'
miRNA:   3'- -CGCGGCGGcua----UCGCGGuAAGUGUua -5'
26653 5' -54.3 NC_005808.1 + 33293 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33437 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33485 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33533 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 17002 0.67 0.62931
Target:  5'- aCGCUGCUGGacGGCGCCGUgcccUACGAa -3'
miRNA:   3'- cGCGGCGGCUa-UCGCGGUAa---GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 33581 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33389 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 33341 0.67 0.62931
Target:  5'- cGUGCCG-CGAUAGCcagcggugGCCGUgcCGCGAUa -3'
miRNA:   3'- -CGCGGCgGCUAUCG--------CGGUAa-GUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 8282 0.67 0.62931
Target:  5'- -gGCCGCCGAccAGCgcgacuacgagGCCGUgCGCGAUg -3'
miRNA:   3'- cgCGGCGGCUa-UCG-----------CGGUAaGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 16886 0.67 0.617899
Target:  5'- uGCGCCGCgUGAacuGCGCCGccugggCGCGAc -3'
miRNA:   3'- -CGCGGCG-GCUau-CGCGGUaa----GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 3609 0.67 0.606501
Target:  5'- -gGCCGUguauuCGGauGCGCCAUUCACGc- -3'
miRNA:   3'- cgCGGCG-----GCUauCGCGGUAAGUGUua -5'
26653 5' -54.3 NC_005808.1 + 10408 0.67 0.606501
Target:  5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3'
miRNA:   3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 31535 0.67 0.606501
Target:  5'- uGUGuuGCCGuggaaacAGCGCCucgGUUCGCGGg -3'
miRNA:   3'- -CGCggCGGCua-----UCGCGG---UAAGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 25671 0.67 0.606501
Target:  5'- cGCGCCGCCG-UGGuUGCCAcugccugggcCGCAGa -3'
miRNA:   3'- -CGCGGCGGCuAUC-GCGGUaa--------GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 41537 0.67 0.605362
Target:  5'- uUGCCGUCGAUcaugagcAGCGgCCGUUUGCGc- -3'
miRNA:   3'- cGCGGCGGCUA-------UCGC-GGUAAGUGUua -5'
26653 5' -54.3 NC_005808.1 + 9291 0.67 0.583786
Target:  5'- cUGCCGCCGGgcGCGCCg--CAgAAc -3'
miRNA:   3'- cGCGGCGGCUauCGCGGuaaGUgUUa -5'
26653 5' -54.3 NC_005808.1 + 4855 0.67 0.572489
Target:  5'- aGCGCCaGCCGGc-GUGCUGggCGCAGUg -3'
miRNA:   3'- -CGCGG-CGGCUauCGCGGUaaGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 15588 0.67 0.572489
Target:  5'- cGCGCUGCgGAUGcaccGCGCCAUcggcCAgGAUg -3'
miRNA:   3'- -CGCGGCGgCUAU----CGCGGUAa---GUgUUA- -5'
26653 5' -54.3 NC_005808.1 + 37636 0.68 0.561244
Target:  5'- aGCGCCGCgaugccccgcuCGAUGGCGuCCugcuugagCACAGg -3'
miRNA:   3'- -CGCGGCG-----------GCUAUCGC-GGuaa-----GUGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.