miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26654 3' -50.2 NC_005808.1 + 41468 0.73 0.499595
Target:  5'- aACGGCcGCUGcUCAuGAUCgacgGCAAGCCu -3'
miRNA:   3'- -UGCUG-CGAUaAGUuCUGGa---CGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 40940 0.74 0.446079
Target:  5'- cGCGAgGUg---CAAGACCUGCuacuggAAGCCa -3'
miRNA:   3'- -UGCUgCGauaaGUUCUGGACG------UUCGG- -5'
26654 3' -50.2 NC_005808.1 + 40613 0.71 0.636985
Target:  5'- gGCGACGauggAUUCAAgGGCCUGU-AGCUu -3'
miRNA:   3'- -UGCUGCga--UAAGUU-CUGGACGuUCGG- -5'
26654 3' -50.2 NC_005808.1 + 38084 0.72 0.544367
Target:  5'- uGCGAUGCgc-UCAAGcGCCUGUGGcGCCg -3'
miRNA:   3'- -UGCUGCGauaAGUUC-UGGACGUU-CGG- -5'
26654 3' -50.2 NC_005808.1 + 37586 0.68 0.773065
Target:  5'- cGCGGCGCUGaaagCGGacugcgccGACCUGCuguucGCCa -3'
miRNA:   3'- -UGCUGCGAUaa--GUU--------CUGGACGuu---CGG- -5'
26654 3' -50.2 NC_005808.1 + 37329 0.74 0.482142
Target:  5'- uCGACGCUGgaaCGAcgcauugccgaccccGACCUGCcGGCCg -3'
miRNA:   3'- uGCUGCGAUaa-GUU---------------CUGGACGuUCGG- -5'
26654 3' -50.2 NC_005808.1 + 35805 0.74 0.435761
Target:  5'- aGCGAUGCgcaagUCAAGGCgCUGaacCAGGCCa -3'
miRNA:   3'- -UGCUGCGaua--AGUUCUG-GAC---GUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 35541 0.71 0.636985
Target:  5'- aACGACGCUGccgccCGAGGCCaUGCGccuGCUg -3'
miRNA:   3'- -UGCUGCGAUaa---GUUCUGG-ACGUu--CGG- -5'
26654 3' -50.2 NC_005808.1 + 35470 0.67 0.851293
Target:  5'- gGCGACGCUGggcuugccaUCGgacugcgugaugaAGcCCUGCAacuucGGCCa -3'
miRNA:   3'- -UGCUGCGAUa--------AGU-------------UCuGGACGU-----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 35246 0.74 0.477825
Target:  5'- aACGACGCcgaggUCGAGGCC-GCGcucaaGGCCa -3'
miRNA:   3'- -UGCUGCGaua--AGUUCUGGaCGU-----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 35119 0.68 0.794086
Target:  5'- gGCGGCGUg---CucGAUCUGCGGcGCCa -3'
miRNA:   3'- -UGCUGCGauaaGuuCUGGACGUU-CGG- -5'
26654 3' -50.2 NC_005808.1 + 34212 0.72 0.555773
Target:  5'- cGCGAUGUcggcgUCGAGgugGCCUGCGAuGCCg -3'
miRNA:   3'- -UGCUGCGaua--AGUUC---UGGACGUU-CGG- -5'
26654 3' -50.2 NC_005808.1 + 33185 0.66 0.877891
Target:  5'- cACGGCGacAUUCAGGGCCUuggguucauggGCGaggauguaGGCCg -3'
miRNA:   3'- -UGCUGCgaUAAGUUCUGGA-----------CGU--------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 32593 0.69 0.729166
Target:  5'- cCGACGCUGUgacCAAGcugGCCcGCGucaagGGCCg -3'
miRNA:   3'- uGCUGCGAUAa--GUUC---UGGaCGU-----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 31600 0.66 0.881128
Target:  5'- -aGGCGCUGUUuccacggcaacacagCGAGGCCcagcaGCAcGCCg -3'
miRNA:   3'- ugCUGCGAUAA---------------GUUCUGGa----CGUuCGG- -5'
26654 3' -50.2 NC_005808.1 + 31264 0.66 0.877891
Target:  5'- gGCGACGUgaUAUUCGuuGACCccgacgugGCAgcgaAGCCu -3'
miRNA:   3'- -UGCUGCG--AUAAGUu-CUGGa-------CGU----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 31009 0.7 0.695047
Target:  5'- cGCGAC-CUGUcCAcGGGCUUGCcGGCCg -3'
miRNA:   3'- -UGCUGcGAUAaGU-UCUGGACGuUCGG- -5'
26654 3' -50.2 NC_005808.1 + 30280 0.66 0.869599
Target:  5'- cGCGAguCGCcggaaaacgUCGGGuagcgccCCUGCGAGCCg -3'
miRNA:   3'- -UGCU--GCGaua------AGUUCu------GGACGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 29411 0.69 0.729166
Target:  5'- cCGGCGCgugGUUCGAGgacuugGCCgGCGAccGCCa -3'
miRNA:   3'- uGCUGCGa--UAAGUUC------UGGaCGUU--CGG- -5'
26654 3' -50.2 NC_005808.1 + 28873 0.67 0.833746
Target:  5'- gACGGCGCgcuggcugcUCAAGAUCggcaaccaggGCAAGCg -3'
miRNA:   3'- -UGCUGCGaua------AGUUCUGGa---------CGUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.