miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26654 3' -50.2 NC_005808.1 + 674 0.69 0.717884
Target:  5'- cACGGCGCUGcuggccGACCcGCAGGCg -3'
miRNA:   3'- -UGCUGCGAUaaguu-CUGGaCGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 1460 0.78 0.291342
Target:  5'- gACGGCGCgg-UCGGcGGCCUccugGCAGGCCg -3'
miRNA:   3'- -UGCUGCGauaAGUU-CUGGA----CGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 2113 0.67 0.86103
Target:  5'- aAUGACGCUGcUUCAAuucauCgUGCAgcAGCCg -3'
miRNA:   3'- -UGCUGCGAU-AAGUUcu---GgACGU--UCGG- -5'
26654 3' -50.2 NC_005808.1 + 2503 0.66 0.893613
Target:  5'- gUGGCGCcgaucUUCGAGgccgGCCUGCu-GCCg -3'
miRNA:   3'- uGCUGCGau---AAGUUC----UGGACGuuCGG- -5'
26654 3' -50.2 NC_005808.1 + 2554 0.67 0.843093
Target:  5'- uCGGCGCUcgaAUUCaAAGACCgccuugUGCAGcacGCCu -3'
miRNA:   3'- uGCUGCGA---UAAG-UUCUGG------ACGUU---CGG- -5'
26654 3' -50.2 NC_005808.1 + 2727 0.69 0.717884
Target:  5'- uCGAUGCguaccgCAAGACCUcgcacgGCAAGCg -3'
miRNA:   3'- uGCUGCGauaa--GUUCUGGA------CGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 6224 0.67 0.843093
Target:  5'- uGCGuuuUGCcuucggcCAGGGCCUGCAcGCCg -3'
miRNA:   3'- -UGCu--GCGauaa---GUUCUGGACGUuCGG- -5'
26654 3' -50.2 NC_005808.1 + 6345 0.66 0.877891
Target:  5'- gGCGAC-CUGUUC--GGCCUGCccAGCg -3'
miRNA:   3'- -UGCUGcGAUAAGuuCUGGACGu-UCGg -5'
26654 3' -50.2 NC_005808.1 + 7340 0.71 0.621806
Target:  5'- uACGGCcccgaggccaagcaGCaGUUCAAGACCUGgGcGGCCg -3'
miRNA:   3'- -UGCUG--------------CGaUAAGUUCUGGACgU-UCGG- -5'
26654 3' -50.2 NC_005808.1 + 7436 0.69 0.717884
Target:  5'- aACGACGUgAUUCAcGACCUGgCGuGGCa -3'
miRNA:   3'- -UGCUGCGaUAAGUuCUGGAC-GU-UCGg -5'
26654 3' -50.2 NC_005808.1 + 8027 0.74 0.446079
Target:  5'- cACGAUGCgcgcCGAGGCCacggGCAAGCUg -3'
miRNA:   3'- -UGCUGCGauaaGUUCUGGa---CGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 9489 1.12 0.001512
Target:  5'- aACGACGCUAUUCAAGACCUGCAAGCCc -3'
miRNA:   3'- -UGCUGCGAUAAGUUCUGGACGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 9537 0.69 0.728042
Target:  5'- uGCGGCcCUGUUCGGccagugcGAUCUGCucGCCg -3'
miRNA:   3'- -UGCUGcGAUAAGUU-------CUGGACGuuCGG- -5'
26654 3' -50.2 NC_005808.1 + 9617 0.71 0.648657
Target:  5'- uCGACGU---UCAGGGCCUuCAAGUCg -3'
miRNA:   3'- uGCUGCGauaAGUUCUGGAcGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 9706 0.67 0.843093
Target:  5'- cGCGugGCUGcUCAAcguguaccgcGACUUGaAGGCCc -3'
miRNA:   3'- -UGCugCGAUaAGUU----------CUGGACgUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 10780 0.7 0.68352
Target:  5'- gACGACGC-AUUCAagcaaucggccgAGGCCgUGCGcgcuGCCg -3'
miRNA:   3'- -UGCUGCGaUAAGU------------UCUGG-ACGUu---CGG- -5'
26654 3' -50.2 NC_005808.1 + 11273 0.67 0.82416
Target:  5'- uGCGGCGCUGggacgCucGGCCagGUAGGCg -3'
miRNA:   3'- -UGCUGCGAUaa---GuuCUGGa-CGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 11514 0.72 0.590364
Target:  5'- aGCGccuGCGCUGgcgUGAGGcCCUGCGAGCg -3'
miRNA:   3'- -UGC---UGCGAUaa-GUUCU-GGACGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 12099 0.76 0.358495
Target:  5'- gAC-ACGCUGggCAAGACCUcGCcGGCCa -3'
miRNA:   3'- -UGcUGCGAUaaGUUCUGGA-CGuUCGG- -5'
26654 3' -50.2 NC_005808.1 + 12682 0.69 0.717884
Target:  5'- -aGGCGCgugUCGAGGCCcGCcuugauAGCCu -3'
miRNA:   3'- ugCUGCGauaAGUUCUGGaCGu-----UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.