miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26654 3' -50.2 NC_005808.1 + 14214 0.68 0.804317
Target:  5'- aACG-CGCUGgaac-GGCCggaagGCAAGCCg -3'
miRNA:   3'- -UGCuGCGAUaaguuCUGGa----CGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 15621 0.69 0.751388
Target:  5'- gACGGCGCcAUUgAccuGGACgUGgAGGCCg -3'
miRNA:   3'- -UGCUGCGaUAAgU---UCUGgACgUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 15893 0.77 0.322784
Target:  5'- gACGGCG-UGUUCGAGuCCUGCGcggugguGGCCg -3'
miRNA:   3'- -UGCUGCgAUAAGUUCuGGACGU-------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 16508 0.69 0.717884
Target:  5'- uACGACGCcgUGUUCAAcGCCgccgGCGauuaccccgcGGCCg -3'
miRNA:   3'- -UGCUGCG--AUAAGUUcUGGa---CGU----------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 17541 0.66 0.901029
Target:  5'- uCGcCGCUGUUCGugcAGGCCcugGCGuggcaccuGGCCu -3'
miRNA:   3'- uGCuGCGAUAAGU---UCUGGa--CGU--------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 17688 0.66 0.893613
Target:  5'- cACGAUGCggcaaacaUCGAGGCCgGUAucgacaacgcgcAGCCg -3'
miRNA:   3'- -UGCUGCGaua-----AGUUCUGGaCGU------------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 18251 0.68 0.803303
Target:  5'- -gGAUGCcggUCAcGACCUGCGccgagaacuugccGGCCg -3'
miRNA:   3'- ugCUGCGauaAGUuCUGGACGU-------------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 19315 0.67 0.86103
Target:  5'- uCGACGCcgagaaGUUCAuGGGCCUGac-GCCg -3'
miRNA:   3'- uGCUGCGa-----UAAGU-UCUGGACguuCGG- -5'
26654 3' -50.2 NC_005808.1 + 20265 0.68 0.814346
Target:  5'- -gGGCGCUGc-CAAGACCgaggGCGacgacaaggcgaAGCCg -3'
miRNA:   3'- ugCUGCGAUaaGUUCUGGa---CGU------------UCGG- -5'
26654 3' -50.2 NC_005808.1 + 20693 0.66 0.893613
Target:  5'- aACGAgCGCaGgcCGAcaccGACCUGCGAcGCCg -3'
miRNA:   3'- -UGCU-GCGaUaaGUU----CUGGACGUU-CGG- -5'
26654 3' -50.2 NC_005808.1 + 21387 0.67 0.82416
Target:  5'- aAUGGCGCg---CuGGGCCUGCGcgAGCa -3'
miRNA:   3'- -UGCUGCGauaaGuUCUGGACGU--UCGg -5'
26654 3' -50.2 NC_005808.1 + 24329 0.67 0.86103
Target:  5'- cCGGCGCcacgcUCAAGGug-GCAAGCCg -3'
miRNA:   3'- uGCUGCGaua--AGUUCUggaCGUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 24562 0.66 0.893613
Target:  5'- cGCGGCGaugg-CGAGGCCggccacgGuCGGGCCg -3'
miRNA:   3'- -UGCUGCgauaaGUUCUGGa------C-GUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 24812 0.66 0.869599
Target:  5'- cCGACaGCaugggUCGAGGCCgcGCAGGCg -3'
miRNA:   3'- uGCUG-CGaua--AGUUCUGGa-CGUUCGg -5'
26654 3' -50.2 NC_005808.1 + 25323 0.68 0.814346
Target:  5'- cCGGCGCUcgUCGccgGGAUUgucCAGGCCg -3'
miRNA:   3'- uGCUGCGAuaAGU---UCUGGac-GUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 25799 0.71 0.625308
Target:  5'- cGCGGCGCgcucgGUaUCGuuGAUCUGCAccgGGCCg -3'
miRNA:   3'- -UGCUGCGa----UA-AGUu-CUGGACGU---UCGG- -5'
26654 3' -50.2 NC_005808.1 + 26338 0.66 0.901029
Target:  5'- cGCGAUGCg---CGAG-CCgacCAGGCCg -3'
miRNA:   3'- -UGCUGCGauaaGUUCuGGac-GUUCGG- -5'
26654 3' -50.2 NC_005808.1 + 26386 0.67 0.86103
Target:  5'- cGCGguGCGCg--UCAAGACCgUGCcuGUCc -3'
miRNA:   3'- -UGC--UGCGauaAGUUCUGG-ACGuuCGG- -5'
26654 3' -50.2 NC_005808.1 + 27430 0.66 0.893613
Target:  5'- cCGAaugGCUGgaCGAGugCUGCGaggucGGCCc -3'
miRNA:   3'- uGCUg--CGAUaaGUUCugGACGU-----UCGG- -5'
26654 3' -50.2 NC_005808.1 + 27524 0.73 0.533038
Target:  5'- cGCGGCGCgcuggCAuaccagcgccaGGGCCUGC-GGCCg -3'
miRNA:   3'- -UGCUGCGauaa-GU-----------UCUGGACGuUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.