Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26654 | 3' | -50.2 | NC_005808.1 | + | 38084 | 0.72 | 0.544367 |
Target: 5'- uGCGAUGCgc-UCAAGcGCCUGUGGcGCCg -3' miRNA: 3'- -UGCUGCGauaAGUUC-UGGACGUU-CGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 11514 | 0.72 | 0.590364 |
Target: 5'- aGCGccuGCGCUGgcgUGAGGcCCUGCGAGCg -3' miRNA: 3'- -UGC---UGCGAUaa-GUUCU-GGACGUUCGg -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 25799 | 0.71 | 0.625308 |
Target: 5'- cGCGGCGCgcucgGUaUCGuuGAUCUGCAccgGGCCg -3' miRNA: 3'- -UGCUGCGa----UA-AGUu-CUGGACGU---UCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 35541 | 0.71 | 0.636985 |
Target: 5'- aACGACGCUGccgccCGAGGCCaUGCGccuGCUg -3' miRNA: 3'- -UGCUGCGAUaa---GUUCUGG-ACGUu--CGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 9617 | 0.71 | 0.648657 |
Target: 5'- uCGACGU---UCAGGGCCUuCAAGUCg -3' miRNA: 3'- uGCUGCGauaAGUUCUGGAcGUUCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 28225 | 0.7 | 0.68352 |
Target: 5'- aACGGCGUgg-UCGAucuGACCaccgGCAAGCUg -3' miRNA: 3'- -UGCUGCGauaAGUU---CUGGa---CGUUCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 16508 | 0.69 | 0.717884 |
Target: 5'- uACGACGCcgUGUUCAAcGCCgccgGCGauuaccccgcGGCCg -3' miRNA: 3'- -UGCUGCG--AUAAGUUcUGGa---CGU----------UCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 7436 | 0.69 | 0.717884 |
Target: 5'- aACGACGUgAUUCAcGACCUGgCGuGGCa -3' miRNA: 3'- -UGCUGCGaUAAGUuCUGGAC-GU-UCGg -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 2727 | 0.69 | 0.717884 |
Target: 5'- uCGAUGCguaccgCAAGACCUcgcacgGCAAGCg -3' miRNA: 3'- uGCUGCGauaa--GUUCUGGA------CGUUCGg -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 674 | 0.69 | 0.717884 |
Target: 5'- cACGGCGCUGcuggccGACCcGCAGGCg -3' miRNA: 3'- -UGCUGCGAUaaguu-CUGGaCGUUCGg -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 29411 | 0.69 | 0.729166 |
Target: 5'- cCGGCGCgugGUUCGAGgacuugGCCgGCGAccGCCa -3' miRNA: 3'- uGCUGCGa--UAAGUUC------UGGaCGUU--CGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 10780 | 0.7 | 0.68352 |
Target: 5'- gACGACGC-AUUCAagcaaucggccgAGGCCgUGCGcgcuGCCg -3' miRNA: 3'- -UGCUGCGaUAAGU------------UCUGG-ACGUu---CGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 40613 | 0.71 | 0.636985 |
Target: 5'- gGCGACGauggAUUCAAgGGCCUGU-AGCUu -3' miRNA: 3'- -UGCUGCga--UAAGUU-CUGGACGuUCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 7340 | 0.71 | 0.621806 |
Target: 5'- uACGGCcccgaggccaagcaGCaGUUCAAGACCUGgGcGGCCg -3' miRNA: 3'- -UGCUG--------------CGaUAAGUUCUGGACgU-UCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 34212 | 0.72 | 0.555773 |
Target: 5'- cGCGAUGUcggcgUCGAGgugGCCUGCGAuGCCg -3' miRNA: 3'- -UGCUGCGaua--AGUUC---UGGACGUU-CGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 27524 | 0.73 | 0.533038 |
Target: 5'- cGCGGCGCgcuggCAuaccagcgccaGGGCCUGC-GGCCg -3' miRNA: 3'- -UGCUGCGauaa-GU-----------UCUGGACGuUCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 8027 | 0.74 | 0.446079 |
Target: 5'- cACGAUGCgcgcCGAGGCCacggGCAAGCUg -3' miRNA: 3'- -UGCUGCGauaaGUUCUGGa---CGUUCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 12099 | 0.76 | 0.358495 |
Target: 5'- gAC-ACGCUGggCAAGACCUcGCcGGCCa -3' miRNA: 3'- -UGcUGCGAUaaGUUCUGGA-CGuUCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 15893 | 0.77 | 0.322784 |
Target: 5'- gACGGCG-UGUUCGAGuCCUGCGcggugguGGCCg -3' miRNA: 3'- -UGCUGCgAUAAGUUCuGGACGU-------UCGG- -5' |
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26654 | 3' | -50.2 | NC_005808.1 | + | 26338 | 0.66 | 0.901029 |
Target: 5'- cGCGAUGCg---CGAG-CCgacCAGGCCg -3' miRNA: 3'- -UGCUGCGauaaGUUCuGGac-GUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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