miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26655 3' -56.9 NC_005808.1 + 1088 0.7 0.31594
Target:  5'- cGGUAGAUUGCcUUGGCCGugucGCGcGGCa -3'
miRNA:   3'- -UCGUCUAGCGuGACCGGCu---UGUcCCG- -5'
26655 3' -56.9 NC_005808.1 + 1482 0.74 0.167474
Target:  5'- uGGCAGGccgggguaUCGCaguGCUGGUCGGACAuGGCg -3'
miRNA:   3'- -UCGUCU--------AGCG---UGACCGGCUUGUcCCG- -5'
26655 3' -56.9 NC_005808.1 + 1612 0.68 0.401171
Target:  5'- gAGCGGuUCG-GCUuuaccaaGGCCGAACugcuGGGCg -3'
miRNA:   3'- -UCGUCuAGCgUGA-------CCGGCUUGu---CCCG- -5'
26655 3' -56.9 NC_005808.1 + 2038 0.67 0.450427
Target:  5'- uGGCAGGUgGCGC---CCGuaucGCGGGGCa -3'
miRNA:   3'- -UCGUCUAgCGUGaccGGCu---UGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 2716 0.69 0.374735
Target:  5'- cGCaAGAccUCGCACggcaaGcGCCGGACguGGGGCu -3'
miRNA:   3'- uCG-UCU--AGCGUGa----C-CGGCUUG--UCCCG- -5'
26655 3' -56.9 NC_005808.1 + 4686 0.66 0.501772
Target:  5'- cGGCAGcgCGgGCcaacauuggccUGGCUGAcCuGGGCg -3'
miRNA:   3'- -UCGUCuaGCgUG-----------ACCGGCUuGuCCCG- -5'
26655 3' -56.9 NC_005808.1 + 5810 0.68 0.440504
Target:  5'- gGGUAGAagcCGCcCUGGuuGGuCAGGGUu -3'
miRNA:   3'- -UCGUCUa--GCGuGACCggCUuGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 6264 0.7 0.308132
Target:  5'- uGCGGuugaucugCGCGCUgggcaGGCCGAACAGGucGCc -3'
miRNA:   3'- uCGUCua------GCGUGA-----CCGGCUUGUCC--CG- -5'
26655 3' -56.9 NC_005808.1 + 7275 0.72 0.242537
Target:  5'- cGCAGAugcugccguggacaUCGCGCUgucccGGCUGcguCAGGGCg -3'
miRNA:   3'- uCGUCU--------------AGCGUGA-----CCGGCuu-GUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 8218 0.66 0.544617
Target:  5'- cGUAG-UCGCGCUGGUCGGcggccgucaGCAGcuuGCg -3'
miRNA:   3'- uCGUCuAGCGUGACCGGCU---------UGUCc--CG- -5'
26655 3' -56.9 NC_005808.1 + 8386 0.67 0.460471
Target:  5'- cGGCc--UCGCGCUGGCugcguagccaguCGGcCAGGGCc -3'
miRNA:   3'- -UCGucuAGCGUGACCG------------GCUuGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 8612 0.72 0.231883
Target:  5'- aAGCuGGUUGCGCUucucGGCCGcuGCGGuGGCg -3'
miRNA:   3'- -UCGuCUAGCGUGA----CCGGCu-UGUC-CCG- -5'
26655 3' -56.9 NC_005808.1 + 8714 0.68 0.440504
Target:  5'- gGGuCGGAugUCGCGCaccuUGaGCCGGGacacCAGGGCg -3'
miRNA:   3'- -UC-GUCU--AGCGUG----AC-CGGCUU----GUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 8871 0.66 0.533782
Target:  5'- cAGCAGAUCgGUACUGaCCG-GCGcGGCc -3'
miRNA:   3'- -UCGUCUAG-CGUGACcGGCuUGUcCCG- -5'
26655 3' -56.9 NC_005808.1 + 9275 0.66 0.555521
Target:  5'- cGCAGAaCGUGCgccgcgccGCCGAGCAGGcCa -3'
miRNA:   3'- uCGUCUaGCGUGac------CGGCUUGUCCcG- -5'
26655 3' -56.9 NC_005808.1 + 9401 0.68 0.411504
Target:  5'- uGCAuGUCGCGCaGGCCGc---GGGCu -3'
miRNA:   3'- uCGUcUAGCGUGaCCGGCuuguCCCG- -5'
26655 3' -56.9 NC_005808.1 + 9609 1.11 0.000343
Target:  5'- gAGCAGAUCGCACUGGCCGAACAGGGCc -3'
miRNA:   3'- -UCGUCUAGCGUGACCGGCUUGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 10935 0.67 0.470632
Target:  5'- cGCGcAUCGCGCcGaCCGAagccacGCAGGGCc -3'
miRNA:   3'- uCGUcUAGCGUGaCcGGCU------UGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 11049 0.67 0.470632
Target:  5'- uGCA-AUCcgGC-CUGGCCGAACAGguGGCc -3'
miRNA:   3'- uCGUcUAG--CGuGACCGGCUUGUC--CCG- -5'
26655 3' -56.9 NC_005808.1 + 11510 0.7 0.300472
Target:  5'- gGGCAGcgCcuGCGCUGGCgugaggcccugCGAGC-GGGCa -3'
miRNA:   3'- -UCGUCuaG--CGUGACCG-----------GCUUGuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.