miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26655 3' -56.9 NC_005808.1 + 8612 0.72 0.231883
Target:  5'- aAGCuGGUUGCGCUucucGGCCGcuGCGGuGGCg -3'
miRNA:   3'- -UCGuCUAGCGUGA----CCGGCu-UGUC-CCG- -5'
26655 3' -56.9 NC_005808.1 + 14321 0.66 0.501772
Target:  5'- --uGGcgCGCGCcuUGGCUGAACugccGGGCc -3'
miRNA:   3'- ucgUCuaGCGUG--ACCGGCUUGu---CCCG- -5'
26655 3' -56.9 NC_005808.1 + 26054 0.67 0.491288
Target:  5'- cGGCGGG-CGCGCUccaugcgcucGG-CGAACucGGGGCg -3'
miRNA:   3'- -UCGUCUaGCGUGA----------CCgGCUUG--UCCCG- -5'
26655 3' -56.9 NC_005808.1 + 16255 0.67 0.491288
Target:  5'- uGGCGGAUgGCGUUGGCCucGCGcGcGGCc -3'
miRNA:   3'- -UCGUCUAgCGUGACCGGcuUGU-C-CCG- -5'
26655 3' -56.9 NC_005808.1 + 32847 0.67 0.480905
Target:  5'- cGGCu--UCGC-CUGGCCGcaGACGGucGGCg -3'
miRNA:   3'- -UCGucuAGCGuGACCGGC--UUGUC--CCG- -5'
26655 3' -56.9 NC_005808.1 + 42208 0.67 0.480905
Target:  5'- -aCAGucgCGCGCUGGCCGcgcucaaucGGCAGGccaaGCa -3'
miRNA:   3'- ucGUCua-GCGUGACCGGC---------UUGUCC----CG- -5'
26655 3' -56.9 NC_005808.1 + 35058 0.67 0.470632
Target:  5'- cGCAGAUCgaGCACgccGCCGAGCGcacGGUa -3'
miRNA:   3'- uCGUCUAG--CGUGac-CGGCUUGUc--CCG- -5'
26655 3' -56.9 NC_005808.1 + 38012 0.67 0.460471
Target:  5'- gAGCAGuuccUCGC-CUGGCgcacCGAGCAGcgccucGGCg -3'
miRNA:   3'- -UCGUCu---AGCGuGACCG----GCUUGUC------CCG- -5'
26655 3' -56.9 NC_005808.1 + 8386 0.67 0.460471
Target:  5'- cGGCc--UCGCGCUGGCugcguagccaguCGGcCAGGGCc -3'
miRNA:   3'- -UCGucuAGCGUGACCG------------GCUuGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 8714 0.68 0.440504
Target:  5'- gGGuCGGAugUCGCGCaccuUGaGCCGGGacacCAGGGCg -3'
miRNA:   3'- -UC-GUCU--AGCGUG----AC-CGGCUU----GUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 5810 0.68 0.440504
Target:  5'- gGGUAGAagcCGCcCUGGuuGGuCAGGGUu -3'
miRNA:   3'- -UCGUCUa--GCGuGACCggCUuGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 9401 0.68 0.411504
Target:  5'- uGCAuGUCGCGCaGGCCGc---GGGCu -3'
miRNA:   3'- uCGUcUAGCGUGaCCGGCuuguCCCG- -5'
26655 3' -56.9 NC_005808.1 + 20300 0.68 0.39284
Target:  5'- uAGCGGGUUGCuCggcGGCCGGuuGCGaugcGGGCu -3'
miRNA:   3'- -UCGUCUAGCGuGa--CCGGCU--UGU----CCCG- -5'
26655 3' -56.9 NC_005808.1 + 25755 0.69 0.348656
Target:  5'- cGCuGggCGCGCU-GCUGGGCGGcGGCa -3'
miRNA:   3'- uCGuCuaGCGUGAcCGGCUUGUC-CCG- -5'
26655 3' -56.9 NC_005808.1 + 26233 0.69 0.340255
Target:  5'- cGCAGuuuugCGCGCgucGCCGAagGCAcGGGCa -3'
miRNA:   3'- uCGUCua---GCGUGac-CGGCU--UGU-CCCG- -5'
26655 3' -56.9 NC_005808.1 + 1088 0.7 0.31594
Target:  5'- cGGUAGAUUGCcUUGGCCGugucGCGcGGCa -3'
miRNA:   3'- -UCGUCUAGCGuGACCGGCu---UGUcCCG- -5'
26655 3' -56.9 NC_005808.1 + 6264 0.7 0.308132
Target:  5'- uGCGGuugaucugCGCGCUgggcaGGCCGAACAGGucGCc -3'
miRNA:   3'- uCGUCua------GCGUGA-----CCGGCUUGUCC--CG- -5'
26655 3' -56.9 NC_005808.1 + 11510 0.7 0.300472
Target:  5'- gGGCAGcgCcuGCGCUGGCgugaggcccugCGAGC-GGGCa -3'
miRNA:   3'- -UCGUCuaG--CGUGACCG-----------GCUUGuCCCG- -5'
26655 3' -56.9 NC_005808.1 + 35362 0.71 0.264378
Target:  5'- cGGCc---CGCGCcagUGGCCGAaguuGCAGGGCu -3'
miRNA:   3'- -UCGucuaGCGUG---ACCGGCU----UGUCCCG- -5'
26655 3' -56.9 NC_005808.1 + 1482 0.74 0.167474
Target:  5'- uGGCAGGccgggguaUCGCaguGCUGGUCGGACAuGGCg -3'
miRNA:   3'- -UCGUCU--------AGCG---UGACCGGCUUGUcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.