miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26656 3' -60.7 NC_005808.1 + 11241 0.68 0.301956
Target:  5'- aCGCCCACUAgCGuGGCgaugagGGUUUGCgCUGCGg -3'
miRNA:   3'- -GCGGGUGGU-GC-UCG------UCAAGCG-GGCGC- -5'
26656 3' -60.7 NC_005808.1 + 11491 0.67 0.348503
Target:  5'- uCGCCugcgaCACCGCaaaGGGCAG--CGCCUGCGc -3'
miRNA:   3'- -GCGG-----GUGGUG---CUCGUCaaGCGGGCGC- -5'
26656 3' -60.7 NC_005808.1 + 11601 0.66 0.391043
Target:  5'- gGCUgGCCGcCGGGCAGcagUGCCaGCGg -3'
miRNA:   3'- gCGGgUGGU-GCUCGUCaa-GCGGgCGC- -5'
26656 3' -60.7 NC_005808.1 + 12667 0.71 0.191244
Target:  5'- uCGCCCAUCAUGcGCAGgcgcgugUCgagGCCCGCc -3'
miRNA:   3'- -GCGGGUGGUGCuCGUCa------AG---CGGGCGc -5'
26656 3' -60.7 NC_005808.1 + 13495 0.71 0.193264
Target:  5'- uGCCgACCGCGccuuugggcgagguaAGCGGUUugcCGUCCGCGc -3'
miRNA:   3'- gCGGgUGGUGC---------------UCGUCAA---GCGGGCGC- -5'
26656 3' -60.7 NC_005808.1 + 14496 0.68 0.287542
Target:  5'- uCGCCCAaCACGGugccGCAGgcgCGCCUgGCGa -3'
miRNA:   3'- -GCGGGUgGUGCU----CGUCaa-GCGGG-CGC- -5'
26656 3' -60.7 NC_005808.1 + 14972 0.7 0.212287
Target:  5'- gGCCgGCCAgcAGCAGaUCGCCgCGCa -3'
miRNA:   3'- gCGGgUGGUgcUCGUCaAGCGG-GCGc -5'
26656 3' -60.7 NC_005808.1 + 15110 0.66 0.365116
Target:  5'- uGCCCGCaucaaCGCGGGCA--UCGCCaacaccaaCGCGg -3'
miRNA:   3'- gCGGGUG-----GUGCUCGUcaAGCGG--------GCGC- -5'
26656 3' -60.7 NC_005808.1 + 15995 0.68 0.287542
Target:  5'- gGUgCGCCGCGcGCAGggacaggUCGCCgGUGa -3'
miRNA:   3'- gCGgGUGGUGCuCGUCa------AGCGGgCGC- -5'
26656 3' -60.7 NC_005808.1 + 16217 0.68 0.266945
Target:  5'- aCGCCCACCACcaucAGCGug-CGgCCGCa -3'
miRNA:   3'- -GCGGGUGGUGc---UCGUcaaGCgGGCGc -5'
26656 3' -60.7 NC_005808.1 + 16596 0.67 0.332436
Target:  5'- gGCCgACCACGcgauGguGUUgGCgCCGCc -3'
miRNA:   3'- gCGGgUGGUGCu---CguCAAgCG-GGCGc -5'
26656 3' -60.7 NC_005808.1 + 17420 0.67 0.340401
Target:  5'- gCGCCCAcgucgcCCuuGAGCAGUggcCCCGCc -3'
miRNA:   3'- -GCGGGU------GGugCUCGUCAagcGGGCGc -5'
26656 3' -60.7 NC_005808.1 + 17847 0.66 0.373625
Target:  5'- uGCCCGCCACcguGGCcucgUCGCCCa-- -3'
miRNA:   3'- gCGGGUGGUGc--UCGuca-AGCGGGcgc -5'
26656 3' -60.7 NC_005808.1 + 22510 0.68 0.29468
Target:  5'- uGCCCGCCaucauccccgcaGCGAGCAcgcgcagCGCgCGCGu -3'
miRNA:   3'- gCGGGUGG------------UGCUCGUcaa----GCGgGCGC- -5'
26656 3' -60.7 NC_005808.1 + 23586 0.66 0.365116
Target:  5'- uGCgCCGCCugGAa-GGcgCGCUCGCGg -3'
miRNA:   3'- gCG-GGUGGugCUcgUCaaGCGGGCGC- -5'
26656 3' -60.7 NC_005808.1 + 24576 0.66 0.373625
Target:  5'- gGCCgGCCACGGuCGGgcCGUCCgGCGu -3'
miRNA:   3'- gCGGgUGGUGCUcGUCaaGCGGG-CGC- -5'
26656 3' -60.7 NC_005808.1 + 24673 0.73 0.131423
Target:  5'- gCGCCCGCCGCGGGCcacGUccaCGCCCagGCu -3'
miRNA:   3'- -GCGGGUGGUGCUCGu--CAa--GCGGG--CGc -5'
26656 3' -60.7 NC_005808.1 + 24729 0.67 0.346058
Target:  5'- gGCCCGCgGCGGGCGcgacaacaccauccUGCCCGCc -3'
miRNA:   3'- gCGGGUGgUGCUCGUcaa-----------GCGGGCGc -5'
26656 3' -60.7 NC_005808.1 + 24774 0.68 0.301956
Target:  5'- uGaCCUGCCACGGGUcGUccUCgauGCCCGCGu -3'
miRNA:   3'- gC-GGGUGGUGCUCGuCA--AG---CGGGCGC- -5'
26656 3' -60.7 NC_005808.1 + 25057 0.67 0.332436
Target:  5'- cCGCCguUACCAuCGGGCAGcaUCGCCacccaGCGc -3'
miRNA:   3'- -GCGG--GUGGU-GCUCGUCa-AGCGGg----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.