miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26657 3' -58.5 NC_005808.1 + 38753 0.65 0.443773
Target:  5'- -cGGCGAGguGCGcaaAGuGCGcuggauuggucgcaACGGCGCc -3'
miRNA:   3'- aaCCGCUCguCGU---UC-CGC--------------UGCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 11423 0.66 0.440804
Target:  5'- -cGGCGAGcCGGCGugcaggucgccgauaAGGCG-CGACaccgGCAg -3'
miRNA:   3'- aaCCGCUC-GUCGU---------------UCCGCuGCUG----CGU- -5'
26657 3' -58.5 NC_005808.1 + 25168 0.66 0.436863
Target:  5'- cUGGCgGGGCcacuGCucaAGGGCGACGugGg- -3'
miRNA:   3'- aACCG-CUCGu---CG---UUCCGCUGCugCgu -5'
26657 3' -58.5 NC_005808.1 + 22428 0.66 0.417467
Target:  5'- -aGGCGaAGCcGCAAGGCGcaccCGA-GCAa -3'
miRNA:   3'- aaCCGC-UCGuCGUUCCGCu---GCUgCGU- -5'
26657 3' -58.5 NC_005808.1 + 13697 0.66 0.417467
Target:  5'- -gGGaCGAGUGGUc-GGCGACGGCcaGCAa -3'
miRNA:   3'- aaCC-GCUCGUCGuuCCGCUGCUG--CGU- -5'
26657 3' -58.5 NC_005808.1 + 11026 0.66 0.414603
Target:  5'- -aGGCGAGCAGCcaAAGgagcacgccuucccGCGAaccgaGGCGCu -3'
miRNA:   3'- aaCCGCUCGUCG--UUC--------------CGCUg----CUGCGu -5'
26657 3' -58.5 NC_005808.1 + 21621 0.66 0.398605
Target:  5'- gUUGGCGAGCA-UGAGGaacaGGuCGGCGUAg -3'
miRNA:   3'- -AACCGCUCGUcGUUCCg---CU-GCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 34551 0.66 0.398605
Target:  5'- aUGGuCGAGCAGCGguuGaGCGuCGAgGCu -3'
miRNA:   3'- aACC-GCUCGUCGUu--C-CGCuGCUgCGu -5'
26657 3' -58.5 NC_005808.1 + 13728 0.66 0.398605
Target:  5'- --cGCcAGCAGCGAGGaCGugG-CGCGg -3'
miRNA:   3'- aacCGcUCGUCGUUCC-GCugCuGCGU- -5'
26657 3' -58.5 NC_005808.1 + 8417 0.67 0.389381
Target:  5'- --aGCGAGCAGUucgcgGGGGCGucgcggaacauCGGCGCGa -3'
miRNA:   3'- aacCGCUCGUCG-----UUCCGCu----------GCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 5476 0.67 0.389381
Target:  5'- -cGGCGAGguGUugccgauggGGGGUacGGCGAUGCu -3'
miRNA:   3'- aaCCGCUCguCG---------UUCCG--CUGCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 24837 0.67 0.389381
Target:  5'- aUGGCucGGGCAacgauuGCAGGGUGACGAgauaccCGCu -3'
miRNA:   3'- aACCG--CUCGU------CGUUCCGCUGCU------GCGu -5'
26657 3' -58.5 NC_005808.1 + 9199 0.67 0.389381
Target:  5'- gUUGGCcugcucGGCGGCGcGGCGcacguucuGCGGCGCGc -3'
miRNA:   3'- -AACCGc-----UCGUCGUuCCGC--------UGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 28379 0.67 0.389381
Target:  5'- cUUGGCGAGguGUuccaguucGAcGcCGGCGGCGCGg -3'
miRNA:   3'- -AACCGCUCguCG--------UUcC-GCUGCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 18041 0.67 0.389381
Target:  5'- -cGGCGGGCuGCuuggGGGCcuuacCGGCGCGg -3'
miRNA:   3'- aaCCGCUCGuCGu---UCCGcu---GCUGCGU- -5'
26657 3' -58.5 NC_005808.1 + 18124 0.67 0.388466
Target:  5'- cUGGCGcaggccaAGCAGCAGGuCGuCGGCGUc -3'
miRNA:   3'- aACCGC-------UCGUCGUUCcGCuGCUGCGu -5'
26657 3' -58.5 NC_005808.1 + 16349 0.67 0.380298
Target:  5'- -cGGCGGGUgcccguGCcuucGGCGACGcGCGCAa -3'
miRNA:   3'- aaCCGCUCGu-----CGuu--CCGCUGC-UGCGU- -5'
26657 3' -58.5 NC_005808.1 + 12847 0.67 0.371358
Target:  5'- cUGGC-AGCAGcCGAGGCcgaguucuacGGCGugGCc -3'
miRNA:   3'- aACCGcUCGUC-GUUCCG----------CUGCugCGu -5'
26657 3' -58.5 NC_005808.1 + 19594 0.67 0.362562
Target:  5'- -aGGCGcAGCAGCAGGcCGACcAgGCGa -3'
miRNA:   3'- aaCCGC-UCGUCGUUCcGCUGcUgCGU- -5'
26657 3' -58.5 NC_005808.1 + 41379 0.67 0.362562
Target:  5'- -aGGgGuauCAGCAaugggucgaaaAGGCGACGGCGUAg -3'
miRNA:   3'- aaCCgCuc-GUCGU-----------UCCGCUGCUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.